[Bioc-devel] error on riesling1 but not on palomino3

[Oleksii Nikolaienko]

Thanks Jennifer,
I tried to fix it and now ran into another (known?) issue because of lack
of proper support for “snprintf”. I would like to disregard this error, but
could you please confirm that it won’t be a problem for a coming Bioc
release? Package is marked as failing its build on the dev package page…

Best,
Oleksii

On Wed, 23 Feb 2022 at 15:14, Jennifer Wokaty <Jennifer.Wokaty using sph.cuny.edu>
wrote:

> Hi Oleksii,
>
> Palomino3, which has the new UCRT toolchain to allow native support of
> UTF-8 and non-European languages, will replace Riesling1 soon, so please
> disregard the error on Riesling1, which is only running for historical
> reference.
>
> We're also working on a way to help troubleshoot issues related to Windows
> environments.
>
> Jennifer Wokaty
> Bioconductor Core Team
>
> ________________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Oleksii
> Nikolaienko <oleksii.nikolaienko using gmail.com>
> Sent: Wednesday, February 23, 2022 4:44 AM
> To: bioc-devel using r-project.org
> Subject: [Bioc-devel] error on riesling1 but not on palomino3
>
> ***ATTENTION: This email came from an external source. Do not open
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>
> Dear Bioc team,
> my package (epiallleleR) currently fails tests on riesling1, but not on the
> other hosts. Wrong results are produced by compiled c++ code, and at the
> moment I don't understand why. I can see that both Windows hosts use GCC
> 8.3.0, but the compiler flags are different. I don't have access to
> Windows, but I wasn't able to reproduce this error on my Linux with GCC
> 7.5.0 when tried to set "-fno-reorder-blocks-and-partition" in my Makevars,
> or did "pkgbuild::with_debug(devtools::check())".
> What are the other differences between riesling1 and palomino3? Is, for
> example, sizeof(int)<4? And what can I do to debug it if I don't have
> Windows around?
>
> Best regards,
> Oleksii
>
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