[Bioc-devel] Supplementing package vignette with workflow vignette

[migdal migdal]

Awesome, thanks!

On Thu, 17 Feb 2022 at 02:29, Hervé Pagès <hpages.on.github using gmail.com>
wrote:

> On 16/02/2022 00:35, migdal migdal wrote:
>
> > Dear bioc-devel,
> >
> > one of the requirements for the Bioconductor package is to pass the R CMD
> > BUILD, including some constraints on the time. To accommodate for some
> > specific cases, Bioconductor implements a concept of long tests which are
> > excluded from the build time limit. I wonder if a corresponding concept
> > exists for the vignettes? I do realize the need for time constraints.
> > However, I think it could be of use to supplement a main vignette with
> > supplementary vignettes that could showcase the package use eg. on a
> larger
> > dataset. Those could have a less strict constraints policy eg. more time
> to
> > run, more resources like number of cores, RAM etc. Are there any ways to
> > accomplish this?
>
> Yes, by creating (and submitting) a workflow package. This is basically
> a vignette wrapped in its own dedicated package (the package typically
> contains no R code).
>
> List of existing workflow packages:
>
> https://bioconductor.org/packages/devel/BiocViews.html#___Workflow
>
> Workflow builds (Tuesdays and Fridays):
>
>    https://bioconductor.org/checkResults/3.15/workflows-LATEST/
>
> Timeout limit is 2h for these packages.
>
> Cheers,
>
> H.
>
>
> >
> > Best Maciek
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> --
> Hervé Pagès
>
> Bioconductor Core Team
> hpages.on.github using gmail.com
>
>

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