[Bioc-devel] EXTERNAL: cbaf and package dependency issue

[Marcel Ramos]

Hi Arman,

It looks like it has been updated at 
https://code.bioconductor.org/browse/cbaf/blob/master/DESCRIPTION.
You should see the changes on the build report within the next 24 - 48 
hours.

If it helps, see also the cgdsr to cBioPortalData migration vignette
https://bioconductor.org/packages/devel/bioc/vignettes/cBioPortalData/inst/doc/cgdsrMigration.html 


Best regards,

Marcel

On 4/26/22 2:10 AM, Arman Shahrisa wrote:
> Hi,
>
> I�m the maintainer of package cbaf.
>
> A week ago, I received an email from Bioconductor that devel branch of my package returns error.
> The problem occurred because a dependent package - cgdsr � was deprecated.
>
> I have modified the package to use cBioPortalData package instead and I pushed the changes almost 32 hours ago.
> Yesterday, I received the same email showing that my package still returns error. Version 1.17.1 returns error.
> But I have fixed the issue in 1.17.2 and I pushed 1.17.3 with minor fixes to Bioconductor�s servers last night.
> Can you verify that you have received either versions 1.17.3 or 1.17.2?
>
> Thank you very much in advance.
>
> Best regards,
> Arman
>
>
> 	[[alternative HTML version deleted]]
>
>
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---
Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263


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