[Bioc-devel] AnnotationHub is too old on build system

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Mon Sep 27 15:14:27 CEST 2021

The AnnotationHub version is related very closes to the version of Bioconductor and R.  Any new additional resources are only available on devel by default.  It should update automatically.  Could you please provide additional information like a link to the build report you are seeing this in?

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Anatoly Sorokin <lptolik using gmail.com>
Sent: Monday, September 27, 2021 5:40 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] AnnotationHub is too old on build system

Hi all,

We have submitted a data package to AnnotationHub, and it was loaded there
around September 20th. Today we've submitted the accompanying software
package, but the automated build system returns an error message:
"error: no records found for the given index" on the line on which we are
extracting data from the Hub. I've noticed that there is a line in the
build report:
"snapshotDate(): 2021-09-10"
which means the AnnotationHub is too old and does not contain our data.
Is it possible to refresh AnnotationHub cache on the building system?


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