[Bioc-devel] Issues with package size

[Vincent Carey]

It seems to me the reason for the large vignette size is that you have
significant DT::datatable rendering
capabilities within your vignettes, and the tables are large.  I would
propose that you use subsets of the
table content for the vignettes, and direct the reader who wants to search
the entire table interactively, to
run a function in the package that will produce the full table in datatable
format.


On Thu, Sep 23, 2021 at 8:56 AM Giulia Pais <giuliapais1 using gmail.com> wrote:

> Hi Lori,
> It is mainly data and a couple of plots, no images. Even if there is very
> minimal data somehow we can’t obtain vignettes smaller than 1 MB.
>
>
> From: "Kern, Lori" <Lori.Shepherd using RoswellPark.org>
> Date: Thursday, September 23, 2021 at 14:52
> To: Zuguang Gu <jokergoo using gmail.com>, Giulia Pais <giuliapais1 using gmail.com>
> Cc: "bioc-devel using r-project.org" <bioc-devel using r-project.org>
> Subject: Re: [Bioc-devel] Issues with package size
>
> In generally, Bioconductor will always require at least one vignette
> automatically checked and that performs non trivial calls to package code.
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zuguang
> Gu <jokergoo using gmail.com>
> Sent: Thursday, September 23, 2021 8:45 AM
> To: Giulia Pais <giuliapais1 using gmail.com>
> Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: Re: [Bioc-devel] Issues with package size
>
> Hi Giulia,
>
> I think it is ok to host the vignettes somewhere else. I have two packages
> of which the vignettes are hosted on GitHub Page.
>
> http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html
> https://www.bioconductor.org/packages/devel/bioc/html/cola.html
>
> But since now the vignettes are not automatically checked, you need to make
> sure every time you update your package, the vignettes can be successfully
> generated.
>
> Cheers,
> Zuguang
>
>
> On Thu, 23 Sept 2021 at 14:07, Giulia Pais <giuliapais1 using gmail.com> wrote:
>
> > Hello, I’m the developer of the package ISAnalytics.
> > I’d like to ask if it is possible to have a file/vignette that links to
> > other documentation outside the package (like a GitHub wiki) since we
> have
> > issues with the maximum allowed package size due to vignette size, We
> would
> > like to maintain as much documentation as possible and we already tried
> to
> > reduce data included but it’s not sufficient.
> > Thanks in advance
> > Giulia Pais
> >
> >
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