[Bioc-devel] Issues with package size

Giulia Pais g|u||@p@|@1 @end|ng |rom gm@||@com
Thu Sep 23 14:53:52 CEST 2021


Hi Lori,
It is mainly data and a couple of plots, no images. Even if there is very minimal data somehow we can�t obtain vignettes smaller than 1 MB.


From: "Kern, Lori" <Lori.Shepherd using RoswellPark.org>
Date: Thursday, September 23, 2021 at 14:52
To: Zuguang Gu <jokergoo using gmail.com>, Giulia Pais <giuliapais1 using gmail.com>
Cc: "bioc-devel using r-project.org" <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Issues with package size

In generally, Bioconductor will always require at least one vignette automatically checked and that performs non trivial calls to package code.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zuguang Gu <jokergoo using gmail.com>
Sent: Thursday, September 23, 2021 8:45 AM
To: Giulia Pais <giuliapais1 using gmail.com>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Issues with package size

Hi Giulia,

I think it is ok to host the vignettes somewhere else. I have two packages
of which the vignettes are hosted on GitHub Page.

http://www.bioconductor.org/packages/devel/bioc/html/ComplexHeatmap.html
https://www.bioconductor.org/packages/devel/bioc/html/cola.html

But since now the vignettes are not automatically checked, you need to make
sure every time you update your package, the vignettes can be successfully
generated.

Cheers,
Zuguang


On Thu, 23 Sept 2021 at 14:07, Giulia Pais <giuliapais1 using gmail.com> wrote:

> Hello, I�m the developer of the package ISAnalytics.
> I�d like to ask if it is possible to have a file/vignette that links to
> other documentation outside the package (like a GitHub wiki) since we have
> issues with the maximum allowed package size due to vignette size, We would
> like to maintain as much documentation as possible and we already tried to
> reduce data included but it�s not sufficient.
> Thanks in advance
> Giulia Pais
>
>
>         [[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel using r-project.org mailing list
> https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel
>

        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org mailing list
https://secure-web.cisco.com/1bVwVH2TSjLktt0qOqzdmtPQeyStFct50lyqYggqz0cWVZz5Nrl13NmfUZgC3uXfgqj0OAIUk0NpuvXaN4Sl8Y4RUv0VLrJI3zmz8Slm6fsVr-gGcVOy_bZL-9KWc0IqbhzJi4vfa7naMQ8TWtKOAnzqR6BWM0zUrhPVfh59QSaBIcwcztT6-chMXAfU01xkg057qask_cA8EduifzdqUaqRELZKrVd1l8wwioW7U8s8pa_FMzA6tEE5A_Ddl62UCFeMvxnXuQjkyvm1Yuh2hgZ9HDGeZOKg_ZgpmZXyI2OVInjnXlv4sCexb93Tkd5Ox/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel

This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.

	[[alternative HTML version deleted]]



More information about the Bioc-devel mailing list