[Bioc-devel] bumphunter 1.35.0 - GENCODE FTP Server File Download Error

[Tamilselvi Guharaj]

Thanks Nitesh.

Selvi

On Wed, Oct 27, 2021 at 3:51 PM Nitesh Turaga <nturaga.bioc using gmail.com>
wrote:

> Dear Selvi,
>
> It looks like a transient issue that happens on and off.
>
> I’m not sure there is any special insight I can offer here. I do not think
> any action is needed on your end.
>
> Best,
>
> Nitesh
>
> Nitesh Turaga
> Scientist II, Department of Data Science,
> Bioconductor Core Team Member
> Dana Farber Cancer Institute
>
> > On Oct 25, 2021, at 12:00 PM, Tamilselvi Guharaj <
> selvi using ds.dfci.harvard.edu> wrote:
> >
> > Dear Bioconductor Core Team,
> >
> > The bumphunter package is exhibiting errors under the Linux and Windows
> > platforms due to a file download failure from the GENCODE FTP server at
> the
> > time of the daily multi-platform build/check testing for BioC 3.14.
> > *
> https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/
> > <
> https://bioc.ism.ac.jp/packages/checkResults/devel/bioc-LATEST/bumphunter/
> >*
> >
> > *FTP Server File Download Error:*
> > Error in `download.file(resource(con), destfile)`: cannot open URL '
> >
> ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.annotation.gtf.gz
> > '
> >
> > The file is downloading fine on our end. We routinely see this error in
> the
> > daily testing reports and it goes away in a day or two. But it seems to
> be
> > persistent for the past five days or so.
> >
> > Are such errors accepted or do we need to take any action from our end?
> >
> > Thank you very much in advance for any input.
> >
> > Thanks,
> > Selvi
> >
> >       [[alternative HTML version deleted]]
> >
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>
>

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