[Bioc-devel] Regarding BioC devel build of package surfaltr

[Hervé Pagès]

On 12/10/2021 14:24, Hervé Pagès wrote:
> Probably the build/ folder that doesn't belong to a package source tree. 
> You removed it today (commit 546e727eb21be2f1da8cd063f431a227345847da) 
> but that was after the builds started so this will only be reflected on 
> Wednesday's build report.

I meant on Thursday's build report, sorry.

H.

> 
> Best,
> H.
> 
> 
> On 12/10/2021 06:50, Pooja Gangras wrote:
>> Hi all,
>>
>> My package just got accepted and was added to the nightly build on 
>> Friday.
>> The build report shows error in installation which it did not show 
>> earlier
>> during package submission ( pkg submission issue here surfaltr · Issue
>> #2256 · Bioconductor/Contributions (github.com))
>>
>> This is the current build (Multiple platform build/check report for BioC
>> 3.14 - All results for package surfaltr (bioconductor.org)) error:
>>
>> ** installing vignettes
>> Warning in file(con, "w") :
>>    cannot open file
>> '/home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-surfaltr/00new/surfaltr/doc/index.html': 
>>
>> No such file or directory
>> Error in file(con, "w") : cannot open the connection
>> ERROR: installing vignettes failed
>> * removing ‘/home/biocbuild/bbs-3.14-bioc/R/library/surfaltr’
>>
>> There are several different solutions suggested in this stackoverflow 
>> page
>> (r - Installing package fails when building vignettes 
>> ((..)/doc/index.html
>> is missing) - Stack Overflow) . I do have ‘inst/doc’ in my .gitignore 
>> file
>> and was wondering if I need to remove it to fix this build issue or is
>> there something else I need to fix?
>>
>> Thank you,
>> Pooja
>>
>> P.S. I have tried sending this email a few times using the email address
>> linked to my package <gangras_pooja using lilly.com> but for some reason the
>> email is not posted to the mailing list and I get a response that says 
>> 'The
>> message's content type was not explicitly allowed'
>>
>>     [[alternative HTML version deleted]]
>>
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> 

-- 
Hervé Pagès

Bioconductor Core Team
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