[Bioc-devel] Memory error from sesame build

[Hervé Pagès]

Hi Wanding,

A process cannot allocate more than 3Gb of memory on 32-bit Windows. See 
my other post on this list for more information about this:

   https://stat.ethz.ch/pipermail/bioc-devel/2021-November/018663.html

Cheers,
H.


On 22/11/2021 05:17, Zhou, Wanding wrote:
> Hi,
> Recently we are experience some memory issue on both development and release (mostly Windows) that causes the sesame package build to fail. We are trying to address it but it seems to run fine locally on our side.
> 
> This is the error on the development branch
> 
> Setting options('download.file.method.GEOquery'='auto')
> Setting options('GEOquery.inmemory.gpl'=FALSE)
> Error: processing vignette 'sesame.Rmd' failed with diagnostics:
> C stack usage  7977908 is too close to the limit
> 
> And this is the error on the release branch
> 
> 
>> data = data.frame(estimate=c(runif(10, 0, 10)))
>> plotLollipop(data)
> Error in grid.newpage() :
>    'Calloc' could not allocate memory (27541715 of 1 bytes)
> Calls: <Anonymous> -> print.ggplot -> grid.newpage
> 
> Let me know if you are aware of something or have a clue. Any insight will be super helpful!
> 
> Thanks!
> 
> 
> Zoom link: https://us02web.zoom.us/j/4248839577
> 
> ----
> Wanding Zhou, Ph.D.
> Assistant Professor
> 
> Office: CTRB 9050
> 3501 Civic Center Blvd
> Philadelphia, PA 19104
> Lab:  https://zhou-lab.github.io/
> Phone (o):  (215) 590-0473
> 
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> 
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-- 
Hervé Pagès

Bioconductor Core Team
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