[Bioc-devel] Dependencies error on Windows in long tests

[Hervé Pagès]

Salut Pierrick,

Please give it one more week. We updated R to 4.1.2 on the release build 
machines last week and riesling1 was the last one to receive the update. 
For riesling1 this update was actually made only a few hours before the 
Long Tests builds, with the unfortunate consequence that not all deps 
got a chance to get installed on the machine before those builds started.

This is just bad timing and I'm sorry for the inconvenience.

Cheers,
H.


On 14/11/2021 23:03, Pierrick Roger wrote:
> Hi,
> 
> The long tests of all my packages (biodb, biodbChebi, biodbHmdb,
> BiodbKegg, biodbLipidmaps, biodbUniprot) are failing on Windows platform
> (riesling1).
> 
> Here is the error for `biodb`:
> ```
> * checking package dependencies ... ERROR
> Packages required but not available:
>    'BiocFileCache', 'R6', 'RSQLite', 'Rcpp', 'XML', 'chk', 'jsonlite',
>    'lgr', 'lifecycle', 'openssl', 'plyr', 'progress', 'rappdirs',
>    'stringr', 'withr', 'yaml', 'testthat'
> 
> Packages suggested but not available:
>    'BiocStyle', 'roxygen2', 'devtools', 'knitr', 'rmarkdown', 'covr',
>    'xml2', 'git2r'
> ```
> 
> See the following pages:
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodb/
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbHmdb/
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbChebi/
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbKegg/
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbUniprot/
>   * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbLipidmaps/
> 
> Does anyone have an idea of what is happening?
> 

-- 
Hervé Pagès

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