[Bioc-devel] Dependencies error on Windows in long tests

Pierrick Roger p|err|ck@roger @end|ng |rom ce@@|r
Mon Nov 15 08:03:33 CET 2021


Hi,

The long tests of all my packages (biodb, biodbChebi, biodbHmdb,
BiodbKegg, biodbLipidmaps, biodbUniprot) are failing on Windows platform
(riesling1).

Here is the error for `biodb`:
```
* checking package dependencies ... ERROR
Packages required but not available:
  'BiocFileCache', 'R6', 'RSQLite', 'Rcpp', 'XML', 'chk', 'jsonlite',
  'lgr', 'lifecycle', 'openssl', 'plyr', 'progress', 'rappdirs',
  'stringr', 'withr', 'yaml', 'testthat'

Packages suggested but not available:
  'BiocStyle', 'roxygen2', 'devtools', 'knitr', 'rmarkdown', 'covr',
  'xml2', 'git2r'
```

See the following pages:
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodb/
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbHmdb/
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbChebi/
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbKegg/
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbUniprot/
 * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbLipidmaps/

Does anyone have an idea of what is happening?

-- 
Research engineer Pierrick Roger
http://www.cea-tech.fr | http://workflow4metabolomics.org | http://www.metabohub.fr
https://fr.linkedin.com/in/pkrog | https://github.com/pkrog
In varietate concordia.



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