[Bioc-devel] Question about IRanges for coordinates greater than 536870912

[Jianhong Ou, Ph.D.]

Hi All,

Recently I encountered issues with IRanges that the coordinates greater than 536870912. Is there any easy solution to extract the information from bam file for the range greater than 2^29 via Rsamtools or GenomicAlignments?

And does Rsamtools support CRAI or CSI index formats?

Thank you in advance for your help.


Yours Sincerely,

Jianhong Ou

Email: jianhong.ou using duke.edu
Bioinformatician II
Department of Cell Biology
Duke University School of Medicine
Durham, NC, 27710

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