[Bioc-devel] Build error on Mac re: Arial font and polygon edges

[Shraddha Pai]

Good morning Hervé,
Thank you - I checked Monday am, and sure enough those errors were resolved.
Best,Shraddha

On Fri, Apr 30, 2021 at 8:51 PM Hervé Pagès <hpages.on.github using gmail.com>
wrote:

> Hi Shraddha,
>
> Hundreds of Bioconductor packages are affected since yesterday. Please
> ignore.
>
> Today we've upgraded R to R 4.1 alpha on machv2, and made a tweak to the
> setup, so hopefully these errors will be gone on tomorrow's report.
>
> Best,
> H.
>
> On 4/30/21 2:46 PM, Shraddha Pai wrote:
> > Hello BioC community,
> > My package netDx is building correctly on Linux but has the following
> > issues on Mac:
> > When running the vignette BuildPredictor.Rmd,
> > 1) we get the error: Warning in doTryCatch(return(expr), name, parentenv,
> > handler) :
> >
> >    no font could be found for family "Arial"
> >
> > 2) the vignette then ends with the error:
> >
> > Error: processing vignette 'BuildPredictor.Rmd' failed with diagnostics:
> >
> > polygon edge not found
> >
> >
> > Why would the package have this error on Macs and not on Linux machines?
> > And the error had not previously occurred. It seems to have occurred with
> > an old vignette (not the one I recently added).
> >
> >
> > One thing I had to change recently was to change the vignette building
> > method for all vignettes, from knitr::knitr to knitr::rmarkdown, but I
> only
> > did it because I was getting a never-before-seen vignette building
> related
> > error for which I found this solution. Was this change a mistake?
> >
> >
> > Any thoughts would be appreciated.
> >
> > Thanks,
> > Shraddha
> >
> > --
> >
> > *Shraddha Pai, PhD*
> > Independent Investigator
> > shraddhapai.com; @spaiglass on Twitter
> >
> >
> > *Ontario Institute for Cancer Research*
> > MaRS Centre, 661 University Avenue, Suite 510, Toronto, Ontario, Canada
> M5G
> > 0A3
> > *@OICR_news* <https://twitter.com/oicr_news> | *www.oicr.on.ca*
> > <http://www.oicr.on.ca/>
> >
> >
> >
> > *Collaborate. Translate. Change lives.*
> >
> >
> >
> > This message and any attachments may contain confidentia...{{dropped:11}}
> >
> > _______________________________________________
> > Bioc-devel using r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
>
> --
> Hervé Pagès
>
> Bioconductor Core Team
> hpages.on.github using gmail.com
>

	[[alternative HTML version deleted]]