[Bioc-devel] Warnings on R CMD check on Mac OS and Linux

[Oluwafemi OLUSOJI]

Hello,

It is a package I recently submitted, cyaniFilter.

Thank you for the prompt response.

Regards,
Daniel

On Tue, Mar 9, 2021, 00:09 Nitesh Turaga <nturaga.bioc using gmail.com> wrote:

> Hi
>
> We can help you better if you tell us which package you are talking about ?
>
> Best,
>
> Nitesh
>
> On 3/8/21, 5:46 PM, "Bioc-devel on behalf of Oluwafemi OLUSOJI via
> Bioc-devel" <bioc-devel-bounces using r-project.org on behalf of
> bioc-devel using r-project.org> wrote:
>
>     Dear All,
>
>     I get this warning on the latest update of my package. The warning
> occurs
>     only with Mac and Linux. I am a bit at loss here. These errors don't
>     actually exist because these functions and methods are properly
> documented.
>     The missing link doesn't even exist anymore.
>
>     I have rebuilt both the documentation and rebuilt the source. R CMD
> check
>     and R CMS check --as.cran doesn't report either on my system as well. I
>     will appreciate any heads-up here.
>
>     Regards,
>     Daniel
>
>
>     Missing link or links in documentation object 'oneDgate.Rd':
>       getChannel
>
>     See section 'Cross-references' in the 'Writing R Extensions' manual.
>     * checking for missing documentation entries ... WARNING
>     Undocumented code objects:
>       PhytoFilter clusterExtract clusterExtractp debrisNc
>       getChannel newFlowframe newFlowframe2 pairsPlot pigmentGate
>       reducedFlowframe rowNumbers summaries
>     Undocumented S4 methods:
>       generic 'summaries' and siglist 'DebrisFilter'
>       generic 'summaries' and siglist 'MarginEvents'
>       generic 'summaries' and siglist 'PhytoFilter'
>
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