[Bioc-devel] Accessing updated package through Devel and priming package for next release

Martin Morgan mtmorg@n@b|oc @end|ng |rom gm@||@com
Tue Mar 2 22:55:30 CET 2021

Have you pushed your changes to git.bioconductor.org? I see

HPAStainR master$ git remote -v
origin	git using git.bioconductor.org:packages/HPAStainR (fetch)
origin	git using git.bioconductor.org:packages/HPAStainR (push)
HPAStainR master$ git pull
Already up to date.
HPAStainR master$ grep Version DESCRIPTION
Version: 1.1.3

On 3/2/21, 4:50 PM, "Bioc-devel on behalf of Tim Nieuwenhuis" <bioc-devel-bounces using r-project.org on behalf of tnieuwe1 using jhmi.edu> wrote:


    I am the maintainer of the package HPAStainR. We are about to respond to reviewer comments on the package's associated paper, and I am trying to have an updated accessible version of the package for the reviewers to use. I currently have the updated version of the package as version 1.1.4 on the master branch, however when I try to download the developer version of my package with


    I end up downloading the previous devel version of HPAStainR which is version 1.1.3. I am unsure if I did something wrong in either my versioning, git pushes, or in my downloading of the developer version. I know I can just have the reviewers acquire the package through github, but I also want to make sure that these changes are primed to be entered into the next Bioconductor release. Any assistance would be greatly appreciated, and pardon my naivet� on the subject.

    Github repository:

    Many thanks,

    Tim Nieuwenhuis
    4th Year Graduate Student
    Human Genetics
    Halushka Laboratory
    Johns Hopkins University SOM

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