[Bioc-devel] Issue with Bug fix push in devel branch

Kern, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Jun 17 18:45:00 CEST 2021

Thank you for reporting.  This was reported earlier this morning as well.  We are working on fixing the bug in the hub code to avoid the errors.  We will try to get a patch out as soon as possible.  You may ignore the error's on those two platforms for now as there is nothing additional on your side.


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Murphy, Alan E <a.murphy using imperial.ac.uk>
Sent: Thursday, June 17, 2021 12:39 PM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Issue with Bug fix push in devel branch

Hi all,

I am just after pushing a bug fix to the current release branch (RELEASE_3_13) and the current devel branch for Bioconductor 3.14. A build was attempted for Bioc 3.14 for which the report is here: https://secure-web.cisco.com/1bgwy9SWXm03dTVuX_ZfqOVa9ZNWUuvOfn_YAsAbW6Umj0N2qp9aQE2ElT1C4tz23T-61U6SiklpvyoQhCeYzWilZmNEAXcDASK3c-VeKYAS8-OdN4EytTIz6yOUvYZRIJU-6WxwHWEvfEk4P613v_19KF5sLUoCxpnUx40NqZzehlIfv90HBIwyzHzFv4F1FGEPAYPjaeNXL57QZgxiNcNxB90NdhMyfXP06yM1IV4k0G3RRX6-qAQY-8NKOtygyMjLkFWuRPfvGkcidhsTV1ZmQqZcvAbStvs0w-EfOM-7Pe_AcdJ1T2wwpD6wn6Ljk/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.14%2Fbioc-LATEST%2FEWCE%2Friesling1-buildsrc.html

The issue is that the build failed on windows and Mac (but not Linux). The issue appears to be with the caching of data files from the related ewceData package and is not related to any change I made in the bug fix. I also can't replicate the error locally.

To note the build for the current release (3.13) hasn't been triggered yet (I imagine it will tonight?) so I can't report if the same error occurs there.

Any help to resolve this would be greatly appreciated!

Kind regards,

Alan Murphy
Neurogenomics lab
UK Dementia Research Institute
Imperial College London

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