[Bioc-devel] Usage of donttest{} in examples
Fabricio de Almeida
|@br|c|o_@|me|d@@||v@ @end|ng |rom hotm@||@com
Fri Jul 9 17:17:28 CEST 2021
Dear Bioc developers,
I submitted a package 3 days ago and the build report returned TIMEOUT for Windows and macOS.
Then I included donttest{} in the example for a function that was taking too long to run, but now it is returning ERROR (http://bioconductor.org/spb_reports/cageminer_buildreport_20210709105948.html). See below:
* ERROR: At least 80% of man pages documenting exported objects
must have runnable examples. The following pages do not:
mine_candidates.Rd, score_genes.Rd
* NOTE: Usage of dontrun{} / donttest{} found in man page examples.
14% of man pages use one of these cases.
Found in the following files:
mine_candidates.Rd
score_genes.Rd
As you can see in the NOTE, these 2 functions represent 14% of the exported functions. Thus, 86% of the functions have runnable examples. Why is the build report saying that <80% have runnable examples?
Best regards,
=========================
Fabr�cio de Almeida Silva
Undergraduate degree in Biological Sciences (UENF)
MSc. candidate in Plant Biotechnology (PGBV/UENF - RJ/Brazil)
Laborat�rio de Qu�mica e Fun��o de Prote�nas e Pept�deos (LQFPP/CBB/UENF - RJ/Brazil)
Lattes CNPq: http://lattes.cnpq.br/3119358824056108
Personal website: https://almeidasilvaf.github.io/home/
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