[Bioc-devel] riesling1: some package that install, build, check, and build bin OK, shown in red

[Martin Morgan]

Mousing over the red dot provides an explanation, e.g., for OncoSimulR "NO, package depends on 'Rgraphviz' which is not available." Rgraphviz is indeed failing on all three platforms, but from the landing page it has propagated some time this release for Linux and macOS and so OncoSimulR can also propagate for these platforms.

Martin

On 7/7/21, 8:15 AM, "Bioc-devel on behalf of Kern, Lori" <bioc-devel-bounces using r-project.org on behalf of Lori.Shepherd using RoswellPark.org> wrote:

    Normally the red dot prevents propagation due to conditions that would not allow the package to function properly such as dependencies not being available, or a requested version of a package is not yet available.




    Lori Shepherd

    Bioconductor Core Team

    Roswell Park Comprehensive Cancer Center

    Department of Biostatistics & Bioinformatics

    Elm & Carlton Streets

    Buffalo, New York 14263

    ________________________________
    From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Ramon Diaz-Uriarte <rdiaz02 using gmail.com>
    Sent: Wednesday, July 7, 2021 7:18 AM
    To: bioc-devel using r-project.org <bioc-devel using r-project.org>
    Cc: r.diaz using uam.es <r.diaz using uam.es>
    Subject: [Bioc-devel] riesling1: some package that install, build, check, and build bin OK, shown in red


    Dear All,

    In BioC 3.14, with riesling1, some packages that are shown as OK in
    Install, Build, Check, and Build bin, show, however a red dot, and have no
    zip. Some examples are (the first one I maintain; the rest I just picked randomly):


    https://secure-web.cisco.com/1LPZs4_m-Sjb7J2OF7hSci9uIIDVRJ8EVLBRY5CDKrIIZJcqZhLRy9txHMsJSf3DZNBBjTnO_yfRvSBnhX3IO-f09R9EaqerV4QjLjvGXOGu6oKf4paevsbGSTPv8mt-iHp2u9hxbkOyBarn1-t2ZgZF10KG11gkBQzvPhQnZaiDKZ4mnEcyBW0wQ6oR4hl11MLnN_rFOa269LUWu4C7tn6kiKGi5x4bs0z2cIW0N3s4s6nGkaoSty1Rw_8kQt1c8QyARYiLejJ_akIGtJmb-U0IMIw9JZKsideOakLD1sbW0cUR8D_VRD37mCqApuOCs/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FOncoSimulR%2F

    https://secure-web.cisco.com/1TRr0mW7EHxnAYu4mZ5EPOhrFQVMMYiQUcymMf8unAW28HCPCv37EpvgSaY-Bd4kEvhtgBxJTfZONOY7Jyo7VC8Ijr2SvX_kRsJx_JPTrv9pyy_KwACIkqHp7L-Ac_4-NCcPAiGt7ImmrJIYoIQaTRl1eHmtRhql169MLnuiG1nzuOw_3-xczfDnIfQ-pC_Ai0NeZpjiHMgxuG9VGKTdi3M1ycqUx7NowAZf9AzoHKN_l5sIZA1TG4hNX217UAzQbJrT3Q1hXB80USxwvXYXvDWUoHaMp8zgmbEnHUIxbqYwO6Wfm6yaIGjlMBTffuU9H/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2FAgiMicroRna%2F

    https://secure-web.cisco.com/1o8SgTdbVVNhIQs7ivAccToqJB9V7H-m1eqm66Y_pd5WfYet1zq5M62Lt4ZSTpKgVvh_2jGS5BBMPfJATxys4HRK9_-Ee_IpWOiuKr1Jn9z4PBWtVN-Yl20WZI-AY1CITPqpUjZDR18kp1lZCa2lK32fCh4t2RIpcy4hFKBXhlgvV6tt08RCLN4h8SMo8BhBbY10wxyxiDzrylI7fqx93HNWO-UvbTqhuE9gnRx3DLS0ro-aZhWkLwTsAdG-GvMwhbFqqCUW6zzXY_i6kE0uAT9GD5wKNEgIjAPjLl9KWou5vQ5rq6kt7bj3e-m0NKPEC/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fggcyto%2F

    https://secure-web.cisco.com/1Ftx9oH59Y_JxkuehpZFkdhFER7ELXhXyMw0uaFIOPZwX0gHe1RWKDg2vAvmhO0tfONpdhIwpZm3TuKSXjxgho07TtSBmd4ZeOWOCKP6ROUEWTMfrhv1T6cLUIZVkhyaw2uRL3FDLC6jpvrXbkLcbjiNOlEvdxlPlz2fkODOPfgrJlqtj-aLRu3B2qz7kYI5tgsZ2VW6jC9iTBmrLmjf6IozEfT2zXpDESMZhbYxDYKzvHpNYREJsvENg5DLTeGrc1xghizQs1lb0pvmBvm24uGI0LIsM-6PHEqGyFlUnmgWtJY7Ql4_FiFO8-7YpxC8V/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fheatmaps%2F

    https://secure-web.cisco.com/1afzI3GqGX-mHX4DDarX2jd2AktznzSU20ieI1-qks8kUqPF-Yu3O0fIUwToXvz7VWZru6pRekTa-2QkCAM2CkRVAMEPrFzLR9DPblCGWSFz1LcGCMF3SOkk_3g4e7ACokDHq_zH6tdG-n2tBMTPqdXepqt-QpZ9G5a4Q_kbjlwZFPV5wcKxAPuarJqUWszExfP-Tor9VKSNxm35MEIsany-KZvlcRfb206YG_-XXO1b1PeTScWb29izYpeZVEDUAEDjVqTAQ9Bb3fPX-VM-SDscUcvUdNzvVG4VCMk_AqXOXRdGbdVGHrzT85H0xkS4I/https%3A%2F%2Fbioconductor.org%2FcheckResults%2Fdevel%2Fbioc-LATEST%2Fyarn%2F


    This has been the case for at least a few days (weeks?). I can see no
    obvious pattern, nor what could maintainers do to fix this.


    Best,


    R.

    --
    Ramon Diaz-Uriarte
    Department of Biochemistry, Lab B-25
    Facultad de Medicina
    Universidad Aut�noma de Madrid
    Arzobispo Morcillo, 4
    28029 Madrid
    Spain

    Phone: +34-91-497-2412

    Email: rdiaz02 using gmail.com
           ramon.diaz using iib.uam.es

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