[Bioc-devel] Submitted package under review: linux/Mac builds fine, warning generated in windows

[James Perkins]

I managed to fix the warning in Windows by renaming the function, please
disregard my previous email.

Jim

On Mon, 1 Feb 2021 at 15:57, James Perkins <jimrperkins using gmail.com> wrote:

> Hi all,
>
> I have a package under review, ExpHunterSuite. I understand that I must
> get the package running with no warnings or errors during the bioconductor
> builds before I can go to the next stage of the submission process.
>
> I have achieved this for the linux and Mac builds -
> http://bioconductor.org/spb_reports/ExpHunterSuite_buildreport_20210201084100.html
>
> However I have the following warning with the Windows check:
>
> * checking whether package 'ExpHunterSuite' can be installed ... WARNING
> Found the following significant warnings:
>   Rd warning: cannot open file
> 'C:/Users/pkgbuild/packagebuilder/workers/jobs/1835/ExpHunterSuite_20210201081747/ExpHunterSuite.buildbin-libdir/00LOCK-ExpHunterSuite/00new/ExpHunterSuite/help/%:::%.html':
> Invalid argument
> See
> 'C:/Users/pkgbuild/packagebuilder/workers/jobs/1835/ExpHunterSuite_20210201081747/ExpHunterSuite.Rcheck/00install.out'
> for details.
>
> Doing a bit of digging, it appears this may be related to a known issue
> with the windows server, as described on the bioc-devel mailing list:
> https://marc.info/?l=bioc-devel&m=160975009013765&w=4
>
> Which basically states there isn't much that can be done for now and not
> to worry...
>
> I am therefore not sure how to proceed - the warning appears to be due to
> problems outside of my control and does not indicate a major issue with the
> package, however if I don't solve it, the package will not go to the next
> step.
>
> Does anyone have any suggestions?
>
> Kindest regards,
>
> JIm
> --
> James R Perkins PhD
> Post-Doctoral Researcher, Rare Diseases Research Network (CIBERER)
> Department of Molecular Biology and Biochemistry
> <https://goo.gl/maps/UCLQXZLR2W12>
> Science Faculty, University of Malaga
> 29071 Malaga, Spain
>
>
>

-- 
James R Perkins PhD
Post-Doctoral Researcher, Rare Diseases Research Network (CIBERER)
Department of Molecular Biology and Biochemistry
<https://goo.gl/maps/UCLQXZLR2W12>
Science Faculty, University of Malaga
29071 Malaga, Spain

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