[Bioc-devel] BioC 3.14: BSgenome.Mmusculus.UCSC.mm10.masked

[Hervé Pagès]

Hi,

It's still on my list to reforge BSgenome.Mmusculus.UCSC.mm10.masked. I 
reforged BSgenome.Mmusculus.UCSC.mm10 back in June after the UCSC folks 
updated the mm10 genome and tracks (see 
https://github.com/Bioconductor/GenomeInfoDb/issues/27). But 
BSgenome.Mmusculus.UCSC.mm10.masked is still based on the old 
BSgenome.Mmusculus.UCSC.mm10 and needs to be resynced with the new one.

I'll do this today. Sorry for the inconvenience.

H.

On 30/08/2021 06:58, Kern, Lori wrote:
> We will look into the ERROR.  You do not have to alter your package at this time as the ERROR is on our end and we will look at correcting.
> 
> 
> 
> Lori Shepherd
> 
> Bioconductor Core Team
> 
> Roswell Park Comprehensive Cancer Center
> 
> Department of Biostatistics & Bioinformatics
> 
> Elm & Carlton Streets
> 
> Buffalo, New York 14263
> 
> ________________________________
> From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of bodenhofer using bioinf.jku.at <bodenhofer using bioinf.jku.at>
> Sent: Monday, August 30, 2021 9:12 AM
> To: bioc-devel using r-project.org <bioc-devel using r-project.org>
> Subject: [Bioc-devel] BioC 3.14: BSgenome.Mmusculus.UCSC.mm10.masked
> 
> Hi,
> 
> The vignette of my package 'podkat' loads the
> 'BSgenome.Mmusculus.UCSC.mm10.masked' package. Currently, my package fails
> on all three BioC 3.14 servers because of this package. On nebbiolo2 and
> riesling1, the package is not available, while the package is available, but
> fails to load, on merida1
> (http://bioconductor.org/checkResults/3.14/bioc-LATEST/podkat/merida1-builds
> rc.html). Is the package no longer available in 3.14 or is there anything
> else that goes wrong? Is there anything I can about it? (except removing it
> from the 'podkat' vignette)
> 
> Any help is gratefully appreciated, thank you,
> Ulrich
> 
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-- 
Hervé Pagès

Bioconductor Core Team
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