[Bioc-devel] Git lfs support

Nitesh Turaga ntur@g@@b|oc @end|ng |rom gm@||@com
Wed Aug 25 02:53:49 CEST 2021


We don’t have LFS support on the Bioconductor git server.

I would suggest finding an alternative.


Nitesh Turaga
Scientist II, Department of Data Science,
Bioconductor Core Team Member
Dana Farber Cancer Institute

> On Aug 24, 2021, at 6:18 PM, Anatoly Sorokin <lptolik using gmail.com> wrote:
> Hi all,
> we have developed a package that provides access to the data in the locally
> stored SQLite database. The GitHub Action successfully built the package,
> but in Bioconductor, it got an error. The only reason for the error is that
> the database itself is stored on GitHub via git-lfs, and the R code got an
> lfs placeholder instead of the actual database.
> Is it possible to activate lfs within Bioconductor automatic building
> server? The database is tiny (80 Mb), but I don't want to have it as a
> regular git object.
> Thank you,
> Anatoly
> 	[[alternative HTML version deleted]]
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