[Bioc-devel] FW: Biconductor package ANCOMBC

Sean Davis @e@nd@v| @end|ng |rom gm@||@com
Sun Aug 8 16:46:12 CEST 2021

Hi, Huang.

It looks like you might need to add the rmarkdown package in Suggests (and
version bump to catch the change):


Since the windows binary version is building, I'm guessing that may fix the


On Sun, Aug 8, 2021 at 7:27 AM Lin, Huang <HUL40 using pitt.edu> wrote:

> Dear Bioconductor Core Team,
> I have pushed a commit to git using git.bioconductor.org:
> packages/ANCOMBC.git<mailto:git using git.bioconductor.org:packages/ANCOMBC.git>
> to primarily address the issue brought up in the following email three days
> ago; however, the latest changes have not yet been propagated. I understand
> it might take up to 48 hours to reflect the latest changes, but given that
> it exceeds the general time length, I was wondering whether there is any
> problem of my latest push?
> I greatly appreciate your time and help!
> Thank you,
> Huang
> From: Kern, Lori <Lori.Shepherd using RoswellPark.org>
> Date: Wednesday, July 28, 2021 at 12:53 AM
> To: Lin, Huang <HUL40 using pitt.edu>
> Subject: Biconductor package ANCOMBC
> Hello Package Maintainer,
> We would like to inform you your package is failing on the devel builders
> of
> Bioconductor
> bioconductor.org/checkResults/devel/bioc-LATEST/ANCOMBC
> The ERROR is the result of a change in knitr as announced on the mailing
> list
> back in June.
> https://stat.ethz.ch/pipermail/bioc-devel/2021-June/018223.html
> The ERROR is real and needs to be corrected. Please see the build report
> for your
> package as the ERROR produced provides explicit instructions for how to
> fix. Please remember to always do a version bump in the DESCRIPTION when
> making
> changes to your package and to push to git.bioconductor.org.
> If the ERROR is not corrected in the next month we will deprecate your
> package
> until the ERROR is resolved with the intention of removing the package in
> the
> next release if the package remains broken.
> We appreciate your quick attention to this matter. If you have further
> questions
> or concerns please ask at bioc-devel using r-project.org
> Cheers
> Lori Shepherd
> Bioconductor Core Team
> Roswell Park Comprehensive Cancer Center
> Department of Biostatistics & Bioinformatics
> Elm & Carlton Streets
> Buffalo, New York 14263
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