[Bioc-devel] FW: Biconductor package ANCOMBC

Lin, Huang HUL40 @end|ng |rom p|tt@edu
Sun Aug 8 15:27:09 CEST 2021

Dear Bioconductor Core Team,

I have pushed a commit to git using git.bioconductor.org:packages/ANCOMBC.git<mailto:git using git.bioconductor.org:packages/ANCOMBC.git> to primarily address the issue brought up in the following email three days ago; however, the latest changes have not yet been propagated. I understand it might take up to 48 hours to reflect the latest changes, but given that it exceeds the general time length, I was wondering whether there is any problem of my latest push?

I greatly appreciate your time and help!

Thank you,

From: Kern, Lori <Lori.Shepherd using RoswellPark.org>
Date: Wednesday, July 28, 2021 at 12:53 AM
To: Lin, Huang <HUL40 using pitt.edu>
Subject: Biconductor package ANCOMBC
Hello Package Maintainer,

We would like to inform you your package is failing on the devel builders of


The ERROR is the result of a change in knitr as announced on the mailing list
back in June.

The ERROR is real and needs to be corrected. Please see the build report for your
package as the ERROR produced provides explicit instructions for how to
fix. Please remember to always do a version bump in the DESCRIPTION when making
changes to your package and to push to git.bioconductor.org.

If the ERROR is not corrected in the next month we will deprecate your package
until the ERROR is resolved with the intention of removing the package in the
next release if the package remains broken.

We appreciate your quick attention to this matter. If you have further questions
or concerns please ask at bioc-devel using r-project.org


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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