[Bioc-devel] nightly build errors while checking tests

Kelly Street @treet@ke||y @end|ng |rom gm@||@com
Wed Apr 28 21:24:51 CEST 2021


I've recently noticed that the nightly builds for the slingshot package
(both release and devel versions) are failing on merida1, but I can't
figure out why. It has something to do with the tests, but I am unable to
reproduce the error. Here is the build report for the release version:

R CMD check provides this output:

* checking tests ...
  Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(slingshot)
  Loading required package: princurve
  > test_check("slingshot")

And the slingshot.Rcheck/tests/testthat.Rout.fail output is similar:

R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(slingshot)
Loading required package: princurve
> test_check("slingshot")

There's not a lot of information to go on, so has anybody else seen this
kind of behavior? I went through the list of packages with errors in the
nightly builds and didn't see anything exactly like this, although
the paxtoolsr package was failing in a similar way (seemingly due to a Java
issue?). Any help would be greatly appreciated.

Kelly Street

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