[Bioc-devel] BFG cleanup on `spiky` repo (under submission)

[Triche, Tim]

Thanks Nitesh!  It looks like this worked, now we just need to squash the R CMD Check issues that arose in the meantime :-)

Much obliged,

Timothy J. Triche, Jr., PhD
Assistant Professor of Bioinformatics, Van Andel Institute
330 Bostwick Avenue NE, Grand Rapids, MI, 49503
(616) 234-5316 (office)
(626) 375-9663 (mobile)
(616) 234-5252 (administrative, courtesy of Lauren Dunkelberg)
https://trichelab.vai.org/

________________________________________
From: Nitesh Turaga <nturaga.bioc using gmail.com>
Sent: Monday, April 5, 2021 12:10 PM
To: Triche, Tim; bioc-devel using r-project.org
Cc: Harmon, Lauren
Subject: [External] Re: [Bioc-devel] BFG cleanup on `spiky` repo (under submission)

Hi Tim,

This package should be fixed now. I've synced your github repo with the one on git.bioconductor.org.

Please check to make sure everything is as expected including the size.

Best,

Nitesh

On 4/1/21, 6:22 AM, "Bioc-devel on behalf of Triche, Tim" <bioc-devel-bounces using r-project.org on behalf of Tim.Triche using vai.org> wrote:

    Hi all,

    We had a couple of chr22 BAMs in this package that kept sneaking in, so I nuked them with the BFG and would like to request a reset (force pull) upstream into the BioC git server repo (git using git.bioconductor.org:packages/spiky).  This should allow for us to proceed with committing the various bugfixes and changes that have occurred downstream of BioC (about 46 last time I checked) and make sure we have cleaned up everything on the spb.

    I nuked everything larger than 10M (realistically I could have whacked everything larger than 3M but 10M was sufficient to catch the BAMs).

    Thanks!

    Timothy J. Triche, Jr., PhD
    Assistant Professor of Bioinformatics, Van Andel Institute
    330 Bostwick Avenue NE, Grand Rapids, MI, 49503
    (616) 234-5316 (office)
    (626) 375-9663 (mobile)
    (616) 234-5252 (administrative, courtesy of Lauren Dunkelberg)
    https://trichelab.vai.org/

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