[Bioc-devel] Few questions of maintaining a new bioconductor package
Krutik Patel (PGR)
K@P@te|5 @end|ng |rom newc@@t|e@@c@uk
Mon Sep 28 12:28:07 CEST 2020
Hi Nitesh,
Sorry for the late response. I have attempted what you suggested and several variations of the email address, and the same message returns.
k.patel5 using newcastle.ac.uk is not associated with a maintainer of a Bioconductor package. Please check the spelling or contact bioc-devel using r-project.org for help.
Would it have been better if I had the email all lower case on submission?
The package is still in the devel stage, could this be the issue?
Best,
Krutik
________________________________
From: Nitesh Turaga <nturaga.bioc using gmail.com>
Sent: 24 September 2020 13:37
To: Krutik Patel (PGR) <K.Patel5 using newcastle.ac.uk>
Cc: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Few questions of maintaining a new bioconductor package
Everything on our end seems to be fine.
You have to first activate your account, and it might be case sensitive "K.Patel5 using newcastle.ac.uk<mailto:K.Patel5 using newcastle.ac.uk>”
Try that.
Nitesh
On Sep 19, 2020, at 4:46 AM, Krutik Patel (PGR) <K.Patel5 using newcastle.ac.uk<mailto:K.Patel5 using newcastle.ac.uk>> wrote:
Thank you for your advice Nitesh and Lori,
To expand on my issue with the Bioconductor Git Credentials site, when I try to activate my account, I get this message.
"k.patel5 using newcastle.ac.uk<mailto:k.patel5 using newcastle.ac.uk> is not associated with a maintainer of a Bioconductor package. Please check the spelling or contact bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> for help."
The email used here is the one which is attached to the package.
Best,
Krutik
________________________________
From: Shepherd, Lori <Lori.Shepherd using RoswellPark.org<mailto:Lori.Shepherd using RoswellPark.org>>
Sent: 18 September 2020 15:29
To: Krutik Patel (PGR) <K.Patel5 using newcastle.ac.uk<mailto:K.Patel5 using newcastle.ac.uk>>; bioc-devel using r-project.org<mailto:bioc-devel using r-project.org> <bioc-devel using r-project.org<mailto:bioc-devel using r-project.org>>
Subject: Re: Few questions of maintaining a new bioconductor package
⚠ External sender. Take care when opening links or attachments. Do not provide your login details.
In Addition to Nitesh's comments:
Please do not push the version to 1.0.0 yourself. This will be done at the time of release by the core team. Continue to increment z of verion x.y.z. For example 0.99.5.
For now, you have to wait for a nightly build to view the results of the build/check.
http://bioconductor.org/checkResults/devel/bioc-LATEST/TimiRGeN/
Information on timing of build report and how long from push to viewing is summarized at the top of this page:
http://bioconductor.org/developers/how-to/troubleshoot-build-report/
Remember new builds will only register with a valid version bump.
You could always create a temporary directory and try checking the code out from git.bioconductor.org to see if the changes got successfully pushed to the server. Or check out the RSS feed
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Krutik Patel (PGR) <K.Patel5 using newcastle.ac.uk>
Sent: Friday, September 18, 2020 5:01 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] Few questions of maintaining a new bioconductor package
Dear Bioconductor team,
I've recently had my package, TimiRGeN, accepted into bioconductor and have a few questions on the maintenance side of things.
1) I am ready to push a newer version of the package. Will I have to set the version to 1.0.0 now? Currently it is version 0.99.4158.
2) Once pushed, how can I check if the build has been successful? Will I have to wait and see if it has passed the nightly builds on build/checkResults? Or is there a faster method.
3) I would like to set up a new SSH key and use this to maintain my package. To do this I will need to activate my account on Bioconductor Git Credentials, but I do not remember setting up a password for this.
Any help in these matters would be great.
Best,
Krutik
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