[Bioc-devel] BiocCheckGitClone error

[Emilie Secherre]

This time I used Git clone folder. Though, when I push famat package in
github, .gitignore file isn't uploaded, so I created a .gitignore file in
the github repository with "famat.Rproj" in it before pushing the whole
package. Unfortunately, the "famat.Rproj" file is still in the git clone
folder...

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Le mar. 22 sept. 2020 à 14:12, Shepherd, Lori <Lori.Shepherd using roswellpark.org>
a écrit :

> We run BiocCheckGitClone on a raw clone of the github directory.   If you
> are running it locally and had .gitignored those files before pushing to
> github then you should be okay.   A way to test this would be to do a git
> clone​  of your github repository, in a different, temporary location to
> see if those files are still present when you do a git clone and running
> BiocCheckGitClone on that temporary cloned copy.
>
> Cheers
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
> ------------------------------
> *From:* Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Emilie
> Secherre <emisecherre using gmail.com>
> *Sent:* Tuesday, September 22, 2020 4:57 AM
> *To:* bioc-devel using r-project.org <bioc-devel using r-project.org>
> *Subject:* [Bioc-devel] BiocCheckGitClone error
>
> Hello,
>
> When i run R CMD and BiocCheck, i get no error or warnings. But, when
> running BiocCheckGitClone, i'm getting this error :
> System files found that should not be tracked : famat.Rproj, .Rhistory
> The issue is that both files are in .gitignore, but this error isn't
> removed... I'm using BiocCheckGitClone on the same file as BiocCheck.
>
> Thank you in advance for your answer,
>
> Emilie Secherre
>
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