[Bioc-devel] BiocCheckGitClone error

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Tue Sep 22 14:12:54 CEST 2020


We run BiocCheckGitClone on a raw clone of the github directory.   If you are running it locally and had .gitignored those files before pushing to github then you should be okay.   A way to test this would be to do a git clone​  of your github repository, in a different, temporary location to see if those files are still present when you do a git clone and running BiocCheckGitClone on that temporary cloned copy.

Cheers


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Emilie Secherre <emisecherre using gmail.com>
Sent: Tuesday, September 22, 2020 4:57 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] BiocCheckGitClone error

Hello,

When i run R CMD and BiocCheck, i get no error or warnings. But, when
running BiocCheckGitClone, i'm getting this error :
System files found that should not be tracked : famat.Rproj, .Rhistory
The issue is that both files are in .gitignore, but this error isn't
removed... I'm using BiocCheckGitClone on the same file as BiocCheck.

Thank you in advance for your answer,

Emilie Secherre

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