[Bioc-devel] FW: Java version issue on Bioconductor test platform

[Arman Shahrisa]

Dear Herve,

Thank you very much for recommending the openxlsx package. It looks like that
it also supports multiple sheets per file. I’ll try replacing xlsx with openxlsx package
for all platforms.

Best regards,
Arman


From: Pages, Herve<mailto:hpages using fredhutch.org>
Sent: Thursday, September 10, 2020 21:52
To: Arman Shahrisa<mailto:shahrisa.arman using hotmail.com>; bioc-devel<mailto:bioc-devel using r-project.org>
Subject: Re: FW: [Bioc-devel] Java version issue on Bioconductor test platform

Hi Arman,

Sure, if xlsx is broken and won't be fixed, use something else. Maybe
try openxlsx? Similar to xlsx but doesn't require Java:

   https://CRAN.R-project.org/package=openxlsx

But why would you use something else on Mac only? It's easier from a
maintenance point of view if you use the same code on all platforms,
whenever possible.

Best,
H.


On 9/9/20 11:06, Arman Shahrisa wrote:
> Hi to all,
>
> I have sent several emails to the maintainer of “xlsx” package but
> unfortunately, he is unresponsive.
>
> Am I allowed to use an alternative package for exporting data only for
> mac users?
>
> Best regards,
>
> Arman
>
> *From: *Arman Shahrisa <mailto:shahrisa.arman using hotmail.com>
> *Sent: *Thursday, September 3, 2020 10:59
> *To: *Pages, Herve <mailto:hpages using fredhutch.org>; bioc-devel
> <mailto:bioc-devel using r-project.org>
> *Subject: *RE: [Bioc-devel] Java version issue on Bioconductor test platform
>
> Hi Herve,
>
> The last response in the previous topic suggested that the maintainer
> has already fixed the problem on GitHub but not CRAN.
>
> https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016791.html
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_pipermail_bioc-2Ddevel_2020-2DMay_016791.html&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=9S9mNopR4XSbGqAMmUModsQcHeIRaBXsJKTU1m2Rf0M&s=d-jhcrcDtaq6GiLWUPPiebqAN_Z2spl69fFwkzz3ERs&e=>
>
> This is from May and the problem still persists. I’ll try contacting the
> maintainer of xlsx.
>
> Best regards,
>
> Arman
>
> *From: *Pages, Herve <mailto:hpages using fredhutch.org>
> *Sent: *Thursday, September 3, 2020 01:06
> *To: *Arman Shahrisa <mailto:shahrisa.arman using hotmail.com>; bioc-devel
> <mailto:bioc-devel using r-project.org>
> *Subject: *Re: [Bioc-devel] Java version issue on Bioconductor test platform
>
> Hi Arman,
>
> You already asked about this in May:
> https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016788.html
> <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_pipermail_bioc-2Ddevel_2020-2DMay_016788.html&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=9S9mNopR4XSbGqAMmUModsQcHeIRaBXsJKTU1m2Rf0M&s=Ojb8pDAdLSGLFTQfhBx0i20SzBueTg8Owpd3LiW5Wts&e=>
>
> Have you followed up with the xlsx maintainers as suggested by Lluís?
>
> Cheers,
> H.
>
> On 8/29/20 11:12, Arman Shahrisa wrote:
>  > Hi to all,
>  >
>  > I�m maintainer of the package �cbaf�. I have been monitoring reports
> for my package for months. I know there were some issues with mac
> server. However, it seems that error shown from mac server regarding my
> package is caused by some incompatible java application installed on
> Bioconductor server. I would be grateful if you would kindly check this
> issue for me.
>  >
>  > Best wishes,
>  > Arman
>  >
>  >
>  >        [[alternative HTML version deleted]]
>  >
>  >
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>  >
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages using fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>

--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages using fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319


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