[Bioc-devel] How to Push a Bug Fix Live - MSstatsTMTPTM

Devon Kohler koh|er@d @end|ng |rom northe@@tern@edu
Mon Nov 16 15:59:49 CET 2020


Hello,

My package had a build error when it moved from development to live version of Bioconductor. I identified the issue and pushed a fix to the Bioconductor github repo. This fix went through on the development version and seemed to work but it has not been pushed live. Is there a way I can push this fix live so that the build error is removed? I've attached the error email I keep getting below.

Best,
Devon Kohler

________________________________
From: BBS-noreply using bioconductor.org <BBS-noreply using bioconductor.org>
Sent: Friday, November 13, 2020 1:00 PM
To: Devon Kohler <kohler.d using northeastern.edu>
Subject: MSstatsTMTPTM problems reported in the Multiple platform build/check report for BioC 3.12

[This is an automatically generated email. Please don't reply.]

Hi MSstatsTMTPTM maintainer,

According to the Multiple platform build/check report for BioC 3.12,
the MSstatsTMTPTM package has the following problem(s):

  o ERROR for 'R CMD build' on malbec1. See the details here:
      https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmaster.bioconductor.org%2FcheckResults%2F3.12%2Fbioc-LATEST%2FMSstatsTMTPTM%2Fmalbec1-buildsrc.html&data=04%7C01%7Ckohler.d%40northeastern.edu%7C1b0e70543a0b41aab10b08d887fe050f%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637408872372107316%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=hSHYSqTMEX7%2BoYX7brLmIMtv5Vz1dFEAYzsVq31H7%2FQ%3D&reserved=0

Please take the time to address this by committing and pushing
changes to your package at git.bioconductor.org

Notes:

  * This was the status of your package at the time this email was sent to you.
    Given that the online report is updated daily (in normal conditions) you
    could see something different when you visit the URL(s) above, especially if
    you do so several days after you received this email.

  * It is possible that the problems reported in this report are false positives,
    either because another package (from CRAN or Bioconductor) breaks your
    package (if yours depends on it) or because of a Build System problem.
    If this is the case, then you can ignore this email.

  * Please check the report again 24h after you've committed your changes to the
    package and make sure that all the problems have gone.

  * If you have questions about this report or need help with the
    maintenance of your package, please use the Bioc-devel mailing list:

      https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2Fhelp%2Fmailing-list%2F&data=04%7C01%7Ckohler.d%40northeastern.edu%7C1b0e70543a0b41aab10b08d887fe050f%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637408872372107316%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=wbexRtWIGRPZY%2ButYooVe8QIgo%2F8nrEWJy5cBUdodWE%3D&reserved=0

    (all package maintainers are requested to subscribe to this list)

For immediate notification of package build status, please
subscribe to your package's RSS feed. Information is at:

https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Frss-feeds%2F&data=04%7C01%7Ckohler.d%40northeastern.edu%7C1b0e70543a0b41aab10b08d887fe050f%7Ca8eec281aaa34daeac9b9a398b9215e7%7C0%7C0%7C637408872372107316%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=gY%2B%2Fd95klgvbVy898ymEBNnwVpdON%2F9DjN53C9vneAU%3D&reserved=0

Thanks for contributing to the Bioconductor project!


	[[alternative HTML version deleted]]



More information about the Bioc-devel mailing list