[Bioc-devel] Debugging not updated for coexnet package

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Wed May 13 14:37:15 CEST 2020

There is lots of documentation on how to achieve this.

Most specifically for pushing changes to the RELEASE_3_11 branch following the documentation


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Juan David Henao Sanchez <judhenaosa using unal.edu.co>
Sent: Wednesday, May 13, 2020 8:27 AM
To: Herv� Pag�s <hpages using fredhutch.org>
Cc: Bioc-devel <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] Debugging not updated for coexnet package


Thanks for your help solving this issue. Could you please let me know how I
can fix the bug in the specific BioC version (3.11). How could I push my
current updated code into this specific version?

Thanks in advance.

I am looking forward to hearing from you soon.

Kind regards,


El mi�., 13 may. 2020 a las 0:44, Herv� Pag�s (<hpages using fredhutch.org>)

> Hi Juan,
> On 5/12/20 13:37, Juan David Henao Sanchez wrote:
> > Dear all.
> >
> > I received an error regarding my package coexnet when it is checking for
> > multiple platforms. I already fix the problem a couple of days ago and I
> > push the solution like:
> >
> > git push origin master
> Indeed the package is now green in Bioc devel (the master branch of your
> package):
>    https://secure-web.cisco.com/1zTvATemlXuwTsvdpt1GSyrR7oj4jKLSuVCFqEK8Bx3Ts3it5bWxLbK1v3PpyD_6tfq4WU4gWj_NQ04_TtwsZ2hK4RQsb-OaJIfEqhlWqhD6O12vKs2OpFOneeTYwcf0V4rEAScnuJQSvkfhFu6XiJLVfp5clHpKPE1EsKf8KipCDobKaXsexUyjocrgN51GAGQyUzjRKX03jeDLkmjhR7wk3ahdNWrf3UvYx4-dY19Qdt7lZTttHHk2N0caKsMImcktvRxlq5dfS0L6exoFpzt5f20YD3bnbtBUbCt9lFkOyesNr6TTka0_KFQ7GxPOIJhSPRvI7azRnoJ4I0x7HwE5Vn9g88HymJootFjCrME8/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.12%2Fbioc-LATEST%2F
> However, as I mentioned in the email I sent you off list, the package is
> still broken in BioC 3.11 (the current release):
>    https://secure-web.cisco.com/1qrz9-Njh-eGNyUg0E4PSo3kL_kE0PXtuHFxkeHDzLaJzY-F0pVmXz4t8eicwDp4CoICG3raQcKmB5kpD0h_ml52ivByFLPamaHcJ3vbS3DPxCewObxoXpIHuTGaSX_vzYA6JNHbnyeqchCQIjAua-8Y059kj0VR-mFNAxgMpRILLsRKNHkWLBSTbwIBhLzO4Dob3xuefzyua_mOvJU1X7O-9fYoTxuJg6MFAVUiR4L1Gmy_5d2o1_Mq6woySFk0fxC9RgZizOBdxyEX8qhb0-PgF37R2CZ4b7IceNwZLgXZJ7HJ0vvuYIa4rsSqcg-3mq5uXGxAxq_UMcWJIKUTxFACVnqB6DnzBUzmA6zawbCI/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.11%2Fbioc-LATEST%2F
> So you also need to fix the RELEASE_3_11 branch of your package.
> Best,
> H.
> >
> > However, I continue receiving the same error message and it is the same
> > previous version of my package.
> >
> > There is something additional I have to do to update my package?
> >
> > Thanks on advance,
> >
> > I look forward to hearing from you soon.
> >
> > Juan
> >
> --
> Herv� Pag�s
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
> E-mail: hpages using fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319

Juan David Henao
Magister in Bioinformatics
Universidad Nacional de Colombia

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