[Bioc-devel] BgeeCall package present twice

[Shepherd, Lori]

Yes looking at the links further it is a legacy version.

The one that resolves to a workflow page if you look closely is when 3.11 was in development phase

https://bioconductor.org/packages/release/workflows/html/BgeeCall.html


While the software page is the current release.

I'm not exactly sure why the development page still appears, this was surprising to me,  and is something I will try to track down.  Regardless the git link points to the same repository on git.bioconductor.org so users would download the correct version.  And yes I checked the repository locations and the only active one is in the Software  manifest so when users are doing BiocManager::install it would grab from the software repository.

Cheers,


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Julien Wollbrett <julien.wollbrett using unil.ch>
Sent: Wednesday, May 13, 2020 5:10 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] BgeeCall package present twice

Hello,

For Bioconductor 3.11 I asked if it was possible to move BgeeCall from
workflow section to software section.
The package is now present in the software section. Thank you.
When I go to this page :
https://secure-web.cisco.com/1ifWHo9w6N8A_tWozVInX7SlCLk6o10Zy8eKyN4jISQTFiyxZw-Y9h4lXtl5NaB4oE44NT3efkyYu0lJPKEC0752nmSAxT5GNQWc18PwT5LOLHT-XloOsrmezREt-WImNjagRE5KsOUOGfmU2mvlIaOFsGtTHS4TNgy8LP12xxfkjSTFdDfjN_JYcDQYdMDzPVGTDITeY1HWFX0c08dPVqVruvdvpOH-n4pOEZ8lzE5PZYBBPWWAh0zpjWnx_7tbKvr4OAqGaYmq3KNUwteCIMmZpe4kLslEZI_8JXPkSfH_l-eUqOVNMsi_sgOlC2n3N4lKChf8FJ8PG4SlC0Smfr-AtetEnNwvQZVwPYRE8w38/https%3A%2F%2Fbioconductor.org%2Fhelp%2Fsearch%2Findex.html%3Fq%3Dbgeecall%2F
<https://secure-web.cisco.com/1ifWHo9w6N8A_tWozVInX7SlCLk6o10Zy8eKyN4jISQTFiyxZw-Y9h4lXtl5NaB4oE44NT3efkyYu0lJPKEC0752nmSAxT5GNQWc18PwT5LOLHT-XloOsrmezREt-WImNjagRE5KsOUOGfmU2mvlIaOFsGtTHS4TNgy8LP12xxfkjSTFdDfjN_JYcDQYdMDzPVGTDITeY1HWFX0c08dPVqVruvdvpOH-n4pOEZ8lzE5PZYBBPWWAh0zpjWnx_7tbKvr4OAqGaYmq3KNUwteCIMmZpe4kLslEZI_8JXPkSfH_l-eUqOVNMsi_sgOlC2n3N4lKChf8FJ8PG4SlC0Smfr-AtetEnNwvQZVwPYRE8w38/https%3A%2F%2Fbioconductor.org%2Fhelp%2Fsearch%2Findex.html%3Fq%3Dbgeecall%2F>BgeeCall
appears twice (in workflow and software).

For both version the git URL is the same. Could you please confirm that
it is just an artefact? When updating the package do I update the one in
the Software section? When users install BgeeCall do they actually
install the package of the software section? Thank you.

Best Regards,

Julien Wollbrett


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