[Bioc-devel] Could not read from remote repository

Nitesh Turaga ntur@g@@b|oc @end|ng |rom gm@||@com
Mon May 4 17:11:24 CEST 2020

You must be using the wrong SSH key most likely. 

If you have R W access it means the key exists but when you try to "fetch" via git, it's using the wrong key. You can set up your config file if you identify which SSH key is correct. 

Your git remote is malformed(formatting), if you resend it to me, I can take a better look at it. 



On 5/3/20, 10:37 PM, "Bioc-devel on behalf of Yingxin Lin" <bioc-devel-bounces using r-project.org on behalf of yingxin.lin using sydney.edu.au> wrote:


    I am trying to follow the guideline to sync the existing repositories of my package scClassify, but I got the following error:

    (base) 192-168-1-112:scClassify yingxinlin$ git fetch --all
    Fetching origin
    From https://github.com/SydneyBioX/scClassify
    * branch            master     -> FETCH_HEAD
    Fetching upstream
    FATAL: invalid repo name: 'packages/scClassify.git' -X -C -oForwardX11Timeout=596h -oXauthLocation=/opt/X11/bin/xauth -p 12022 localhost'
    fatal: Could not read from remote repository.

    Please make sure you have the correct access rights
    and the repository exists.
    error: Could not fetch upstream

    And I have checked ssh -T git using git.bioconductor.org<mailto:git using git.bioconductor.org>, which indicates that I have R and W access for scClassify. The “~/.ssh/config” file is set as point 15 mentioned in https://www.bioconductor.org/developers/how-to/git/faq/.

    Below is my remote setting:
    (base) 192-168-1-112:scClassify yingxinlin$ git remote -v
    origin  https://github.com/SydneyBioX/scClassify.git (fetch)
    origin  https://github.com/SydneyBioX/scClassify.git (push)
    upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/scClassify.git (fetch)
    upstream        git using git.bioconductor.org<mailto:git using git.bioconductor.org>:packages/scClassify.git (push)

    I am wondering if you could provide some suggestions on how I can resolve these issues. Thank you in advance!

    Best regards,
    Yingxin Lin

    	[[alternative HTML version deleted]]

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