[Bioc-devel] The errror from build report of ASpediaFI

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Tue Mar 31 15:41:50 CEST 2020

For What Its Worth ---

I can reproduce this on my linux machine.  I would suggest making sure you are using R-4.0.0 and all the latest package versions as there have been recent updates to S4Vectors and possibly others that you depend/import.

# if the following suggests updating packages please do so.

BiocManager::valid( )
BiocManager::install( )

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Bioinformatics NCC <parklab.bi using gmail.com>
Sent: Tuesday, March 31, 2020 12:55 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] The errror from build report of ASpediaFI


I am a maintainer of the ASpediaFI package.

Recently, I made few changes to the package and found the error in the
build report only for the Windows platform.

R CMD build and check ran without errors on my machine (Windows) and Linux
server as well, so I wonder what caused the error.

The error from the report is:

Quitting from lines 293-299 (ASpediaFI.rnw) Error: processing vignette
'ASpediaFI.rnw' failed with diagnostics: cannot coerce type 'S4' to vector
of type 'double' --- failed re-building 'ASpediaFI.rnw' SUMMARY: processing
the following file failed: 'ASpediaFI.rnw' Error: Vignette re-building
failed. Execution halted



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