[Bioc-devel] FEM package update and release

[Shepherd, Lori]

FEM was deprecated before the last release as shown in the release build report.

http://bioconductor.org/checkResults/release/bioc-LATEST/FEM/

FEM will not be undeprecated and added to devel (master)  until after it is building in the RELEASE_3_11 branch.

The package has been broken for over four months and the email that was listed in the DESCRIPTION of the package was undeliverable to all our attempts to reach out to fix the package which is consistent with our deprecation policy.

Please make all necessary changes to the RELEASE_3_11 branch on git.bioconductor.org  and email us when the package is building cleanly to start the undeprecation process.

Cheers,



Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Zhen Yang <zhenyang using fudan.edu.cn>
Sent: Wednesday, June 10, 2020 3:40 AM
To: bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: [Bioc-devel] FEM package update and release

Dear Biocondcutor admins:

This is Zhen Yang, the maintainer of the Bioconductor package of "FEM" (https://secure-web.cisco.com/1AAfYhbwS6z55CClXAtYY-ZpNArZ365NvI4ZtwAC0U6FER4aRYb2YprsZcMsuj9uyCMOQVim04nZytrwOMV-DvIQZzNegp5HkkJp-11XMsk58BTUvJCi02Zzr16sRJdQECiWbAqjes4F8kLxO-1J97B8Dl9Qt8piuH8kiF5hfgTPHzRnNXTiQszYt2Bevbpt5XcxXFv7zc7ZCVKnr0ucw9k-cefLfF5u2JWWy8TLB_OHbmhHE5q0CxOSf0H86cd-MUbTRuEb0El7db3J2lUz49xyOP9V2N78__57YFyTXHUHvwMsGpfGK3T0_UOL4Co2jotw99BtuL7ZzrcVwy6JUwonoPOdbDLc1agjoPb69ScA/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FFEM.html), We have recently made some update for this package, and I have submitted it to the Github (https://secure-web.cisco.com/1SD1Iq4XRcJ7UFUmOpaAJMKpqnCLnTs8iOx65OWgL2yg5BA2bqtQQMn9TNq-OV0-Bcw2cgHr3A6IWvQS-xgMxrZdMYfJh25ga4tmle3C9h3Ryj5ZI0b5cC6iu0-3EzQbFC7LZILgSW39kt5LYWrZOr3KzLG744NiA8s6XzwaVkurXTK9z92RVaAFt7-8ehfbqs43UiUPClw7v797nGJffg5KQp8bK_0cHJg_IcqElQmGumc2sUnfiOGXZkVXnizHfZ-MP2t4-VPa4J59S25SkFN3i9Iy2kOJyMVzmhBdoJU1j5225bXh-DBkA30-L5dmDhGoCny2Q9a-ySF9HfNDZaA/https%3A%2F%2Fgithub.com%2Fzyangx%2FFEM) and BioC last week, It seems Code in Github have got updated but not in BioC. We checked page of devel-version for FEM but nothing in:

https://secure-web.cisco.com/1SVs8qoRBfmGALIg1QPuNi-DFJZu42jp_tNtu835yLRemUgN9_J5rP17KRl7bLWyWlhna3YK3TPWgeqLPsQ_YlF6FKDYyQ-s4QRPXdzVgIsCErT9zCh3mVofzc2y0dN6ErS-U_-6WL0wJHuuX-S3mo3EEKsvwuwQwtVfgV6A15vzLATSoWanHj0xGCkS40WIcmPZU6EZYL7x1cDvDYFY74cF3Cq7jOmmITZu5KmBE7P3ARkswL4PCM20H_PmVBHzjxvV6kC6tdL2zSxMFjGFwduvmMvaDB9H1jOfbdNFJRHKpFzSvHsZ7zanXFEpvsDatuLyc3j11Bvc7HjH4TNGUWTomp4KRRNVwiYVKcpkQros/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fhtml%2FFEM.html

I would like to ask is there anything I should do after I push my code to BioC and how long it would take to release the devel-version?

Thanks a lot and best wishes!

Zhen Yang
Fudan University

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