[Bioc-devel] Resource temporarily unavailable error with rtracklayer

[Michael Lawrence]

Please raise an issue on the rtracklayer GitHub.

Thanks,
Michael

On Sun, Jul 19, 2020 at 8:20 PM Charles Plessy <charles.plessy using oist.jp> wrote:
>
> On 15/07/2020 10:53, Charles Plessy wrote:
> > On 14/07/2020 19:56, Vincent Carey wrote:
> >> Can you post an example dataset that triggers the error reproducibly?
> >
> > here it is:
> >
> > https://www.dropbox.com/s/ai9itm586clt4y9/gp.Rds?dl=0
> >
> > It is a GPos object; interestingly I just realised that export.bw will
> > not crash if I convert it to GRanges first...
>
> Dear Vincent and everybody,
>
> as wrapping my GPos objects in a GRanges() call suppresses the error
> effectively, I wonder if I should just push a CAGEr update with that
> fix, or if it is more a bug in rtracklayer or GenomicRanges ?
>
> Have a nice day,
>
> Charles
>
> --
> Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.plessy using oist.jp
> Okinawa  Institute  of  Science  and  Technology  Graduate  University
> Staff scientist in the Luscombe Unit - ~ - https://groups.oist.jp/grsu
> Toots from work - ~ ~~ ~ - https://mastodon.technology/@charles_plessy
>
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Michael Lawrence
Senior Scientist, Data Science and Statistical Computing
Genentech, A Member of the Roche Group
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