[Bioc-devel] providerVersion error with BSgenome genomes

Diego Diez d|ego10ru|z @end|ng |rom gm@||@com
Thu Jul 16 07:38:08 CEST 2020


Dear all,

I am finding an error when running the following code:

> library(BSgenome.Dmelanogaster.UCSC.dm3)
Loading required package: BSgenome
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: rtracklayer

> dm3 <- BSgenome.Dmelanogaster.UCSC.dm3
> providerVersion(dm3)
Error in (function (classes, fdef, mtable)  :
  unable to find an inherited method for function ‘providerVersion’
for signature ‘"BSgenome"’

> BiocManager::version()
[1] ‘3.12’


I am expecting to get "dm3" with this genome. What would be the proper
way to do this?

Thank you.

Best,

Diego



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