[Bioc-devel] bsapply and vcountPattern: sapply -> bplapply
Ad|ty@@Bh@gw@t @end|ng |rom mp|-bn@mpg@de
Thu Jan 2 10:20:01 CET 2020
Dear Herve & co,
Wish you a happy new year :-).
I am optimizing code that calls BSgenome::vcountPDict.
BSgenome::vcountPDict calls bsapply, which calls sapply.
Could this sapply be replaced by a bplapply instead - that would turn all the vcount, vmatch, etc operations into parallellized operations, by just a minimal intervention (sapply -> bplapply).
Or is there a reason why this was not done, or perhaps is there an alternative paradigm which you use for speeding up things?
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