[Bioc-devel] Integrating python into an R package

Turaga, Nitesh N|te@h@Tur@g@ @end|ng |rom Ro@we||P@rk@org
Tue Feb 18 16:54:29 CET 2020

Take a look at BiocSklearn. 


> On Feb 18, 2020, at 8:11 AM, Zhang, David <david.zhang.12 using ucl.ac.uk> wrote:
> Dear all, 
> I’m a bioinformatics PhD student at UCL who’s recently been trying to develop an R package that has some python dependencies. Specifically, areas of my current pipeline are written in python for speed and any ML has been implemented through sklearn. I was wondering what you would advise as the best practice of integrating python code into Bioconductor/R p
> packages? E.g. R to python interfaces (such as reticulate) or advising package users to call python scripts independently or re-writing python code in R? 
> Any advice would be much appreciated. 
> Many thanks in advance, 
> David 
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