[Bioc-devel] Latest commit didn't update package

[David Jimenez-Morales]

Thanks,

yes, I checked the build report.

And yes, I am afraid that you are right: it could have simply taken too
much time. It is a package that tries to accomplish many things and I was
warned during the review process that it was probably doing too much. But
on the other hand, I know it is found very useful by a lot of users.

Anyway, thanks for your feedback. For the next release, my goal will be to
reduce dependencies.

Thanks
David


On Tue, Feb 11, 2020 at 9:31 AM Martin Morgan <mtmorgan.bioc using gmail.com>
wrote:

> remember to visit the build report page
> http://bioconductor.org/checkResults/devel/bioc-LATEST/artMS/ ; perhaps
> your package failed to build, e.g., because one of the 187(!) dependent
> packages did not install correctly on the devel builder, or because of
> transient problems?
>
> Martin Morgan
>
> On 2/11/20, 12:11 PM, "Bioc-devel on behalf of Shepherd, Lori" <
> bioc-devel-bounces using r-project.org on behalf of
> Lori.Shepherd using RoswellPark.org> wrote:
>
>     That does seem odd.  Please let us know when you see this again with
> examples and I can investigate more.
>
>
>     Lori Shepherd
>
>     Bioconductor Core Team
>
>     Roswell Park Comprehensive Cancer Center
>
>     Department of Biostatistics & Bioinformatics
>
>     Elm & Carlton Streets
>
>     Buffalo, New York 14263
>
>     ________________________________
>     From: David Jimenez-Morales <biodavidjm using gmail.com>
>     Sent: Tuesday, February 11, 2020 12:00 PM
>     To: Shepherd, Lori <Lori.Shepherd using RoswellPark.org>
>     Cc: bioc-devel <bioc-devel using r-project.org>
>     Subject: Re: [Bioc-devel] Latest commit didn't update package
>
>     Thanks Lori, that's correct, next time I will be more patient ;-)
>
>     I decided to ask because I saw other packages with a commit time after
> mine, however, their built went successfully through. Just curious: is
> there an explanation?
>
>     Thanks a lot!
>     David
>
>     On Tue, Feb 11, 2020 at 5:06 AM Shepherd, Lori <
> Lori.Shepherd using roswellpark.org<mailto:Lori.Shepherd using roswellpark.org>>
> wrote:
>     It looks like it did get updated:
>     http://bioconductor.org/checkResults/release/bioc-LATEST/artMS/
>     Is showing 1.4.3 which is the expected version correct?
>
>     Remember it can take up to 24 hours for the build reports to pick up
> the new versions depending on when you pushed changes
>
>     Cheers,
>
>
>     Lori Shepherd
>
>     Bioconductor Core Team
>
>     Roswell Park Comprehensive Cancer Center
>
>     Department of Biostatistics & Bioinformatics
>
>     Elm & Carlton Streets
>
>     Buffalo, New York 14263
>
>     ________________________________
>     From: Bioc-devel <bioc-devel-bounces using r-project.org<mailto:
> bioc-devel-bounces using r-project.org>> on behalf of David Jimenez-Morales <
> biodavidjm using gmail.com<mailto:biodavidjm using gmail.com>>
>     Sent: Monday, February 10, 2020 10:17 AM
>     To: bioc-devel <bioc-devel using r-project.org<mailto:
> bioc-devel using r-project.org>>
>     Subject: [Bioc-devel] Latest commit didn't update package
>
>     Dear all,
>
>     the latest commit of the artMS package didn't update the package on
> release
>     (it should be now 1.4.3). However, it worked on development (now
> version
>     1.5.3). I checked the git log and many other packages with commits
> after
>     mine went through.
>
>     From the log:
>
>     <item>
>     <title>artMS</title>
>     <link>https://bioconductor.org/packages/artMS/</link>
>     <description>
>     Add select method to remove outliers It addresses the following issues:
>     biodavidjm/artMS#140 biodavidjm/artMS#122 biodavidjm/artMS#111
>     biodavidjm/artMS#137 biodavidjm/artMS#139 biodavidjm/artMS#138
>     </description>
>     <author> David JM <biodavidjm using gmail.com<mailto:biodavidjm using gmail.com>>
> </author>
>     <pubDate>2020-02-08 16:43:48 -0800</pubDate>
>     <guid>539d4cbcfde6ab7c18f2fd88357e78810dedcef8</guid>
>     </item>
>
>     Would you mind to take a look?
>
>     Thanks a lot!
>     David
>
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