[Bioc-devel] ptime ERROR

Shepherd, Lori Lor|@Shepherd @end|ng |rom Ro@we||P@rk@org
Thu Feb 6 17:21:14 CET 2020

Actually it looks like it has to do with having a conditional > 1 rather than a class() ==

There is this post:

And this:


Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of Andris Jankevics <A.Jankevics using bham.ac.uk>
Sent: Thursday, February 6, 2020 11:17 AM
To: chris.r.john86 using gmail.com <chris.r.john86 using gmail.com>; bioc-devel using r-project.org <bioc-devel using r-project.org>
Subject: Re: [Bioc-devel] ptime ERROR

Hi Chris,

Error message is caused by changes in R 4.0.0.

You can find more details here https://developer.r-project.org/Blog/public/2019/11/09/when-you-think-class.-think-again/index.html.

In short you have to check all cases where you are using `class()` in your code.



From: Bioc-devel <bioc-devel-bounces using r-project.org> on behalf of chris.r.john86 using gmail.com <chris.r.john86 using gmail.com>
Sent: 06 February 2020 16:09:07
To: bioc-devel using r-project.org
Subject: Re: [Bioc-devel] ptime ERROR

This is the error, sorry my hand slipped when writing the last email. Thank you.

checking examples ... ERROR

Running examples in �M3C-Ex.R� failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")

On Thu, 6 Feb 2020 at 16:07, Christopher John <chris.r.john86 using gmail.com>

> Hi
> I was wondering will this error disappear by itself? Because I did not
> change the package.
> Thanks,
> Chris

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