[Bioc-devel] IlluminaHumanMethylation450kanno.ilmn12.hg19

[xin wwa]

P.S. It only a bug on windows. It works fine on MacOS and ubuntu.
Xin Yu
Ph.D. student of Biomedical Informatics
College of Bioinformatics - Huazhong Agricultural University
whirlsyu using gmail.com
yuxin using webmail.hzau.edu.cn
tel: (+86) 186-5313-5769


xin wwa <whirlsyu using gmail.com> 于2020年12月29日周二 下午11:09写道：

> Also, I tested on my computer as well as my colleagues', they all froze at
> the testing line.
> Therefore, I think that could be a bug that reproducible. If need more
> information, please let me know.
>
> Thanks in advance and any help is appreciated.
> Best,
> Xin Yu
> Ph.D. student of Biomedical Informatics
> College of Bioinformatics - Huazhong Agricultural University
> whirlsyu using gmail.com
> yuxin using webmail.hzau.edu.cn
> tel: (+86) 186-5313-5769
>
>
> xin wwa <whirlsyu using gmail.com> 于2020年12月29日周二 下午5:24写道：
>
>> Dear bioconductor team,
>>
>> recently I found that under R 4.0.3 I can not install the package
>> IlluminaHumanMethylation450kanno.ilmn12.hg19,
>> It froze at the testing message.
>> I tried this on 3.6.3, It will successfully be installed.
>> However, It will be failed if you are using R 4.0.2+
>> It will let the devtools::check() function frozen as well as long as you
>> are using  IlluminaHumanMethylation450kanno.ilmn12.hg19 as the database
>> file.
>> I can't fix this problem, I tried a lot even reinstall R totally.
>>
>>
>> * installing *source* package
>> 'IlluminaHumanMethylation450kanno.ilmn12.hg19' ...
>> ** using staged installation
>> ** data
>> *** moving datasets to lazyload DB
>> ** inst
>> ** help
>> *** installing help indices
>>   converting help for package
>> 'IlluminaHumanMethylation450kanno.ilmn12.hg19'
>>     finding HTML links ... done
>>     IlluminaHumanMethylation450kanno.ilmn12.hg19
>>                                             html
>>     SNPs.CommonSingle                       html
>> ** building package indices
>> ** testing if installed package can be loaded from temporary location
>> ############# froze at this line
>>
>> sessionInfo()
>>
>> R version 4.0.3 (2020-10-10)
>> Platform: x86_64-w64-mingw32/x64 (64-bit)
>> Running under: Windows 10 x64 (build 19041)
>>
>> Matrix products: default
>>
>> locale:
>> [1] LC_COLLATE=Chinese (Simplified)_China.936  LC_CTYPE=Chinese
>> (Simplified)_China.936
>> [3] LC_MONETARY=Chinese (Simplified)_China.936 LC_NUMERIC=C
>>
>> [5] LC_TIME=Chinese (Simplified)_China.936
>>
>> attached base packages:
>> [1] stats     graphics  grDevices utils     datasets  methods   base
>>
>> loaded via a namespace (and not attached):
>> [1] compiler_4.0.3 tools_4.0.3
>>
>>
>>
>> Thanks in advance and any help is appreciated.
>>
>> Best,
>>
>> Xin Yu
>> Ph.D. student of Biomedical Informatics
>> College of Bioinformatics - Huazhong Agricultural University
>> whirlsyu using gmail.com
>> yuxin using webmail.hzau.edu.cn
>> tel: (+86) 186-5313-5769
>>
>

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