[Bioc-devel] updating released version of package

[James W. MacDonald]

You also have a commit from yesterday in master that isn't yet reflected on
the build machine, again because it takes time for the build machine to
build stuff. IIRC we are over 24 hours per build, but that may be old news
(FAKE NEWS!).

On Thu, Dec 10, 2020 at 11:09 AM James W. MacDonald <jmacdon using uw.edu> wrote:

> It looks like you bumped it just yesterday:
>
> commit 5a9929aed33e40c11609f3d064b114d95d95e6cb
> Author: Ted Natoli <ted.e.natoli using gmail.com>
> Date:   Wed Dec 9 16:42:16 2020 -0500
>
>     fixing version bump
>
> commit accd8a5871fe38a8a1f63b32b4e79d2640e86792
> Author: Ted Natoli <ted.e.natoli using gmail.com>
> Date:   Wed Dec 9 16:32:47 2020 -0500
>
>     update RELEASE version number
>
> And it takes a while to propagate, so you are probably being too impatient.
>
> Jim
>
> On Thu, Dec 10, 2020 at 10:59 AM Ted Natoli <ted.e.natoli using gmail.com>
> wrote:
>
>> Hi James,
>>
>> Thanks for the response. The corresponding changes were committed to the
>> master branch on November 23. The development build report seems to be
>> using the correct code, or at least close to it, as the most recent commit
>> it shows there is from December 8. I did push to both github and
>> bioconductor repos and I did bump the version number too, which is
>> reflected in the development build report but not release.
>>
>> Here are links to the build reports if it's helpful.
>>
>> devel: https://bioconductor.org/checkResults/3.13/bioc-LATEST/cmapR/
>> release: https://bioconductor.org/checkResults/3.12/bioc-LATEST/cmapR/
>>
>> Thanks again,
>> Ted
>>
>> On Thu, Dec 10, 2020 at 10:41 AM James W. MacDonald <jmacdon using uw.edu>
>> wrote:
>>
>>> Did you bump your version number? How long has it been since you
>>> committed the changes? If you have a github repo, you remembered to push to
>>> both the Bioconductor and GitHub repos?
>>>
>>> On Thu, Dec 10, 2020 at 10:19 AM Ted Natoli <ted.e.natoli using gmail.com>
>>> wrote:
>>>
>>>> Hello all,
>>>>
>>>> I'm trying to update the released version of my package, cmapR, because
>>>> one
>>>> of the packages it depends on has been deprecated and hence install of
>>>> cmapR now fails.
>>>>
>>>> I've followed the instructions here in order to get those changes over
>>>> to
>>>> the released version of the package:
>>>>
>>>> https://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
>>>>
>>>> However, I don't see that the released version has been updated.
>>>> Looking at
>>>> the build reports, the latest commit reflected there is from before I
>>>> made
>>>> the code changes. How do I get these changes to propagate to the release
>>>> branch?
>>>>
>>>> I'm sure I must be missing something very basic, but any help would be
>>>> appreciated.
>>>>
>>>> Thanks in advance,
>>>> Ted
>>>>
>>>>         [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel using r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>>
>>> --
>>> James W. MacDonald, M.S.
>>> Biostatistician
>>> University of Washington
>>> Environmental and Occupational Health Sciences
>>> 4225 Roosevelt Way NE, # 100
>>> Seattle WA 98105-6099
>>>
>>
>
> --
> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
> 4225 Roosevelt Way NE, # 100
> Seattle WA 98105-6099
>


-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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