[Bioc-devel] non-conformable arrays

[Vincent Carey]

Hi Mikhail -- would you provide the results of sessionInfo() after the
failure?  Thanks

On Fri, Aug 7, 2020 at 7:08 PM Mikhail Dozmorov <mikhail.dozmorov using gmail.com>
wrote:

> Dear Bioconductor team,
>
> I am trying to update a package we developed, HiCcompare.
> https://bioconductor.org/packages/HiCcompare/. The package has been
> successfully submitted previously. However, now `R CMD check` throws an
> error:
> E> Quitting from lines 426-427 (HiCcompare-vignette.Rmd)
> E> Error: processing vignette 'HiCcompare-vignette.Rmd' failed with
> diagnostics:
> E> non-conformable arrays
> E> --- failed re-building ‘HiCcompare-vignette.Rmd’
>
> Yet, If I knit the vignette manually, it builds. If I execute the code
> manually, it works. If I install the package from Bioconductor, it also
> works.
>
> I'm working with this package using bioconductor/bioconductor_docker:devel.
> But the strange behavior - vignette knits manually but fails in CMD check -
> persists both in Docker container and on local R installation.
>
> Please advise, where to troubleshoot next.
> Thanks,
> Mikhail
>
> ---
> Mikhail Dozmorov, Ph.D., Blick scholar
> Associate Professor, Department of Biostatistics
> Affiliate, Department of Pathology
> Virginia Commonwealth University
> OCS #738, 830 E. Main St, RVA, 23298
> E-mail:  mikhail.dozmorov using vcuhealth.org
> Phone: 804-827-2055
> https://medschool.vcu.edu/expertise/detail.html?id=mdozmorov
>
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>
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