[Bioc-devel] Help with setting up a build environment to match

Kieran O'Neill kone||| @end|ng |rom bcg@c@c@
Sat Apr 25 00:05:34 CEST 2020


Thanks! Yes, that'd be it. Looks like I have R 3.6 running locally.

And I suspect you've also identified the cause of the bug. I've tried subbing is() for class(), and am just waiting for the build to complete.

Kind regards,


From: Andris Jankevics <A.Jankevics using bham.ac.uk>
Sent: April 24, 2020 2:01 PM
To: Kieran O'Neill
Cc: bioc-devel using r-project.org
Subject: Re: [Bioc-devel] Help with setting up a build environment to match


Are you using R 4.00 on Ubuntu?

Travis error indicates that you are using class(), output of this command has changed.



On 24 Apr 2020 20:40, koneill using bcgsc.ca wrote:
A package I maintain, contiBAIT, is failing to build on the BioC test servers.


It's also failing on my Travis build set up on GitHub


But I can't reproduce this in my local environment. R CMD build runs just fine against the source, with no errors. I'm even running Ubuntu 18.04.

Can anyone suggest a relatively easy way to exactly reproduce the build environment on Travis or the BioC build servers so  I can reproduce this error and debug it?


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