[Bioc-devel] Help with setting up a build environment to match

Andris Jankevics A@J@nkev|c@ @end|ng |rom bh@m@@c@uk
Fri Apr 24 23:01:50 CEST 2020


Hi,


Are you using R 4.00 on Ubuntu?

Travis error indicates that you are using class(), output of this command has changed.

https://www.bioconductor.org/developers/how-to/troubleshoot-build-report/#classEq

BW,
Andris

On 24 Apr 2020 20:40, koneill using bcgsc.ca wrote:
A package I maintain, contiBAIT, is failing to build on the BioC test servers.


https://bioconductor.org/checkResults/3.11/bioc-LATEST/contiBAIT/malbec2-buildsrc.htmlv


It's also failing on my Travis build set up on GitHub


https://travis-ci.org/github/oneillkza/ContiBAIT/builds/674999114


But I can't reproduce this in my local environment. R CMD build runs just fine against the source, with no errors. I'm even running Ubuntu 18.04.



Can anyone suggest a relatively easy way to exactly reproduce the build environment on Travis or the BioC build servers so  I can reproduce this error and debug it?


Thanks!




        [[alternative HTML version deleted]]

_______________________________________________
Bioc-devel using r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel

	[[alternative HTML version deleted]]



More information about the Bioc-devel mailing list