[Bioc-devel] Warning in tokay2

[Martin Morgan]

See the documentation at https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Cross_002dreferences -- you probably have something \link[foo]{bar}, which says that 'bar' is documented on a help page WITH A FILE NAME 'foo', but actually the file name is something else.

The simplest solution is to write this as \link{bar} and let the help system resolve the location dynamically.

The complicated and not-best-practice solution is to find out what the name of the file is, and use that instead of 'foo'. But the name of a help file sounds like internal package business that other packages shouldn't need to know about...

Martin

On 4/14/20, 9:51 AM, "Bioc-devel on behalf of VALLEJOS MENESES Catalina" <bioc-devel-bounces using r-project.org on behalf of Catalina.vallejos using igmm.ed.ac.uk> wrote:

    Dear all,
    
    The build report for BASiCS currently includes a warning in tokay2 (but malbec2 and machv2 are ok). This seems to be an issue associated to the documentation of brewer.pal in RColorBrewer:
    
    
    file link 'brewer.pal' in package 'RColorBrewer' does not exist and so has been treated as a topic
    
    I can see that other packages have similar warnings in tokay2. Has anyone found a solution for it?
    
    Many thanks in advance,
    
    Best wishes,
    
    Cata
    
    The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
    
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