[Bioc-devel] Error building Vignnette in Bioconductor Windows server when Submitting a new package

[Martin Morgan]

Often this means that there is some resource in your vignette that has not been terminated correctly, e.g., a parallel process that has not be stopped or a graphical device that is still open. 

Martin

On 9/25/19, 4:46 AM, "Bioc-devel on behalf of Alberto Valdeolivas" <bioc-devel-bounces using r-project.org on behalf of alvaldeolivas using gmail.com> wrote:

    Hello all,
    
    I am submitting the following new package to Bioconductor:
    
    https://github.com/Bioconductor/Contributions/issues/1263
    
    R CMD BUILD is reporting the following ERROR when running in Windows server:
    
    Error: processing vignette 'OmnipathR.Rnw' failed with diagnostics: Failed
    to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for
    vignette with name 'OmnipathR'. The following files exist in directory '.':
    'Bioc.bib', 'OmnipathR-concordance.tex', 'OmnipathR-fig2.pdf',
    'OmnipathR-fig3.pdf', 'OmnipathR-fig4.pdf', 'OmnipathR.Rnw',
    'OmnipathR.tex' --- failed re-building 'OmnipathR.Rnw'
    
    http://bioconductor.org/spb_reports/OmnipathR_buildreport_20190925041516.html
    
    The package pass R CMD BUILD and R CMD CHECK with no issues in the other
    systems.
    
    I have googled the error and found some related topics. However, the
    solution does not seem very clear to me.
    
    https://stat.ethz.ch/pipermail/r-devel/2013-April/066318.html
    
    They commented that these build error could be transient. However, I
    resubmitted and had the same problem again.
    
    Any clue about what to do? just keep submitting?
    
    Many thanks and best regards,
    Alberto.
    
    	[[alternative HTML version deleted]]
    
    _______________________________________________
    Bioc-devel using r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/bioc-devel