[Bioc-devel] DMRcate_2.0.0 and updated DMRcatedata

[Tim Peters]

Thanks Nitesh,

The only reason DMRcatedata isn't passing BiocCheck is because of package numbering and the fact that the old version already exists - which this new version is supposed to overwrite (http://bioconductor.org/spb_reports/DMRcatedata_buildreport_20190912205035.html)<http://bioconductor.org/spb_reports/DMRcatedata_buildreport_20190912205035.html#tokay1_buildsrc_anchor>. I understand the reviewer won't look at the package until it passes, but because this is an update of a (now) ExperimentData package can you ask the reviewer to overlook this please?

Best,

Tim

On 12/9/19 11:51 pm, Turaga, Nitesh wrote:

Thanks Tim. The assigned reviewer will review your package and provide suggestions as needed.

Best,

Nitesh



On Sep 12, 2019, at 3:15 AM, Tim Peters <t.peters using garvan.org.au><mailto:t.peters using garvan.org.au> wrote:

Hi Nitesh,

Thanks, I have transformed DMRcatedata into an ExperimentHub package and
started an issue here
https://github.com/Bioconductor/Contributions/issues/1247.

Cheers,

Tim

On 23/8/19 3:46 am, Turaga, Nitesh wrote:


Hi Tim,

Based on what your have mentioned, it seems that DMRcatedata should become an experiment hub package.

https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html

Please take a look that vignette.

Let me know if you have any questions.

Nitesh



On Aug 21, 2019, at 7:49 PM, Tim Peters <t.peters using garvan.org.au><mailto:t.peters using garvan.org.au> wrote:

   Hello,

   I have a major update of DMRcate and its associated data package,
   DMRcatedata. They both pass R CMD check and BiocCheck for R 3.6.1.
   Because the new version of DMRcate depends on the updated DMRcatedata package,
   can I host DMRcatedata (it's ~28MB) somewhere for you to download and update Bioconductor, and
   then I can sync the new version of DMRcate please?

   Best,

   Tim

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Tim Peters, PhD

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Garvan Institute of Medical Research

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===================

Tim Peters, PhD

Bioinformatics Research Officer | Immunogenomics Laboratory | Immunology Division

Garvan Institute of Medical Research

384 Victoria St., Darlinghurst, NSW, Australia 2010

E: t.peters using garvan.org.au<mailto:t.peters using garvan.org.au> | W: http://www.garvan.org.au | P: +612 9295 8325

NOTICE
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===================

Tim Peters, PhD

Bioinformatics Research Officer | Immunogenomics Laboratory | Immunology Division

Garvan Institute of Medical Research

384 Victoria St., Darlinghurst, NSW, Australia 2010

E: t.peters using garvan.org.au<mailto:t.peters using garvan.org.au> | W: http://www.garvan.org.au | P: +612 9295 8325


NOTICE
Please consider the environment before printing this email. This message and any attachments are intended for the addressee named and may contain legally privileged/confidential/copyright information. If you are not the intended recipient, you should not read, use, disclose, copy or distribute this communication. If you have received this message in error please notify us at once by return email and then delete both messages. We accept no liability for the distribution of viruses or similar in electronic communications. This notice should not be removed.

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