[Bioc-devel] Incorrect version of package MSstatsTMT in Bioconductor 3.10

Pages, Herve hp@ge@ @end|ng |rom |redhutch@org
Thu Oct 31 20:44:03 CET 2019


Hi Ting,

We don't roll back anything. We just take whatever is in 
https://git.bioconductor.org/packages/MSstatsTMT and build that.
I don't see any commit from August in the RELEASE_3_10 branch there:

hpages using spectre:~/sandbox/MSstatsTMT$ git status
On branch master
Your branch is up-to-date with 'origin/master'.
nothing to commit, working directory clean
hpages using spectre:~/sandbox/MSstatsTMT$ git log
commit 8597c7bd033b5690013604317490f8cca1507185
Author: Nitesh Turaga <nitesh.turaga using gmail.com>
Date:   Tue Oct 29 13:43:20 2019 -0400

     bump x.y.z version to odd y after creation of RELEASE_3_10 branch

commit 10bd72b5b331be9085401ea2d294f8906bd0992d
Author: Nitesh Turaga <nitesh.turaga using gmail.com>
Date:   Tue Oct 29 13:11:24 2019 -0400

     bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

commit f8fa7784468e4494678379c6fbe2ea86bb5a412a
Author: Ting Huang <huang.tin using husky.neu.edu>
Date:   Sat May 4 16:12:18 2019 -0400

     Fix version number

commit d401543723af97fb2204bd91a58677e649b391f2
Author: Ting Huang <huang.tin using husky.neu.edu>
Date:   Sat May 4 14:36:40 2019 -0400

     bug fix: my bug fix

commit 76d20aabeb8a2990c7ca794aea4ffb4633239c56
Author: Ting Huang <huang.tin using husky.neu.edu>
Date:   Sat May 4 14:11:32 2019 -0400

     bug fix: my bug fix

commit 3b5924216f9d82867696d978adb735d69f765593
Author: Ting Huang <huang.tin using husky.neu.edu>
Date:   Sat May 4 14:09:28 2019 -0400

     Update version number

etc...

If you've committed something in August, make sure to push your changes 
to git.bioconductor.org in addition to GitHub. See our collections of 
HOWTO documents for how to do this:

   https://bioconductor.org/developers/how-to/git/

Hope this helps.

Best,
H.


On 10/31/19 12:31, ting huang wrote:
> Dear Bioc-Team,
> 
> I’m the developer of package MSstatsTMT. Today I tried to install MSstatsTMT from the new released Bioconductor 3.10. But it was found that the version of MSstatsTMT is rolled back.
> 
> My last commit to MSstatsTMT is 2019 Aug 15 and the version in Bioconductor 3.9 is 1.2.7. However the new version MSstatsTMT 1.4.0 in Bioconductor 3.10 showed the last commit is 2019 May 4. Somehow MSstatsTMT was rolled back to an old version in Bioconductor 3.10. Any clue on why this happened?
> 
> Many thanks and best regards,
> Ting
> _______________________________________________
> Bioc-devel using r-project.org mailing list
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-- 
Hervé Pagès

Program in Computational Biology
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